Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11j07f
(582 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : short... 267 3e-72
AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : short... 261 3e-70
L26290-1|AAA27981.1| 441|Caenorhabditis elegans clathrin-associ... 258 2e-69
Z83115-4|CAB05557.3| 422|Caenorhabditis elegans Hypothetical pr... 123 1e-28
L26291-1|AAA72418.1| 422|Caenorhabditis elegans protein ( Caeno... 123 1e-28
AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin, mu/m... 121 3e-28
U41023-4|AAA82343.2| 414|Caenorhabditis elegans Adaptin, mu/med... 75 4e-14
AF016440-4|AAB65902.1| 157|Caenorhabditis elegans Adaptin, smal... 42 3e-04
U21309-2|AAN73882.1| 515|Caenorhabditis elegans Hypothetical pr... 40 0.001
U53340-2|AAA96207.1| 142|Caenorhabditis elegans Ap-2 small chai... 35 0.048
Z74028-3|CAA98425.1| 1908|Caenorhabditis elegans Hypothetical pr... 31 0.79
U21309-6|AAT92086.1| 541|Caenorhabditis elegans Hypothetical pr... 29 3.2
U21309-5|AAT92085.1| 536|Caenorhabditis elegans Hypothetical pr... 29 3.2
U21309-4|AAN73883.1| 546|Caenorhabditis elegans Hypothetical pr... 29 3.2
AY314778-1|AAQ84885.1| 546|Caenorhabditis elegans calcitonin re... 29 3.2
AY314777-1|AAQ84884.1| 541|Caenorhabditis elegans calcitonin re... 29 3.2
AY314776-1|AAQ84883.1| 536|Caenorhabditis elegans calcitonin re... 29 3.2
U80027-19|AAC48129.2| 313|Caenorhabditis elegans F-box a protei... 28 4.2
AL132862-5|CAB70227.1| 419|Caenorhabditis elegans Hypothetical ... 28 4.2
AL132862-4|CAB60533.1| 420|Caenorhabditis elegans Hypothetical ... 28 4.2
U13642-9|AAG00035.1| 187|Caenorhabditis elegans Clock (biologic... 28 5.6
Z70686-9|CAA94614.3| 915|Caenorhabditis elegans Hypothetical pr... 27 7.4
AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta... 27 7.4
U41109-7|AAQ62450.1| 1045|Caenorhabditis elegans Guanylyl cyclas... 27 9.7
U41109-6|AAQ62451.1| 1111|Caenorhabditis elegans Guanylyl cyclas... 27 9.7
>AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform b protein.
Length = 435
Score = 267 bits (655), Expect = 3e-72
Identities = 121/145 (83%), Positives = 136/145 (93%)
Frame = +1
Query: 148 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHIKR 327
MIGGLFVYNHKGEVLISR+YRDD+ RNAVDAFRVNVIHARQQVRSPVTN+ARTSFFH+KR
Sbjct: 1 MIGGLFVYNHKGEVLISRIYRDDVTRNAVDAFRVNVIHARQQVRSPVTNMARTSFFHVKR 60
Query: 328 ANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGY 507
N+W+ AVT+QNVNAAMVFEFL + D MQSYFGK++EEN+KNNFVLIYELLDEILDFGY
Sbjct: 61 GNVWICAVTRQNVNAAMVFEFLKRFADTMQSYFGKLNEENVKNNFVLIYELLDEILDFGY 120
Query: 508 PQNSDTGVLKTFITQQGIXSASKEE 582
PQN+D GVLKTFITQQG+ +A+KEE
Sbjct: 121 PQNTDPGVLKTFITQQGVRTATKEE 145
>AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform a protein.
Length = 441
Score = 261 bits (639), Expect = 3e-70
Identities = 118/141 (83%), Positives = 132/141 (93%)
Frame = +1
Query: 148 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHIKR 327
MIGGLFVYNHKGEVLISR+YRDD+ RNAVDAFRVNVIHARQQVRSPVTN+ARTSFFH+KR
Sbjct: 1 MIGGLFVYNHKGEVLISRIYRDDVTRNAVDAFRVNVIHARQQVRSPVTNMARTSFFHVKR 60
Query: 328 ANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGY 507
N+W+ AVT+QNVNAAMVFEFL + D MQSYFGK++EEN+KNNFVLIYELLDEILDFGY
Sbjct: 61 GNVWICAVTRQNVNAAMVFEFLKRFADTMQSYFGKLNEENVKNNFVLIYELLDEILDFGY 120
Query: 508 PQNSDTGVLKTFITQQGIXSA 570
PQN+D GVLKTFITQQG+ +A
Sbjct: 121 PQNTDPGVLKTFITQQGVRTA 141
>L26290-1|AAA27981.1| 441|Caenorhabditis elegans
clathrin-associated protein homologueprotein.
Length = 441
Score = 258 bits (633), Expect = 2e-69
Identities = 117/141 (82%), Positives = 131/141 (92%)
Frame = +1
Query: 148 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHIKR 327
MIGGLFVYNHKGEVLISR+YRDD+ RNAVDAFRVNVIHARQQVRSPVTN+ARTSFFH+KR
Sbjct: 1 MIGGLFVYNHKGEVLISRIYRDDVTRNAVDAFRVNVIHARQQVRSPVTNMARTSFFHVKR 60
Query: 328 ANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGY 507
N+W+ AVT+QNVNAAMVF FL + D MQSYFGK++EEN+KNNFVLIYELLDEILDFGY
Sbjct: 61 GNVWICAVTRQNVNAAMVFAFLKRFADTMQSYFGKLNEENVKNNFVLIYELLDEILDFGY 120
Query: 508 PQNSDTGVLKTFITQQGIXSA 570
PQN+D GVLKTFITQQG+ +A
Sbjct: 121 PQNTDPGVLKTFITQQGVRTA 141
>Z83115-4|CAB05557.3| 422|Caenorhabditis elegans Hypothetical
protein K11D2.3a protein.
Length = 422
Score = 123 bits (296), Expect = 1e-28
Identities = 55/135 (40%), Positives = 91/135 (67%), Gaps = 2/135 (1%)
Frame = +1
Query: 160 LFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRS--PVTNIARTSFFHIKRAN 333
+F+ + KG+ +ISR YR DI A+D F ++++ +++ S PV T+F IK N
Sbjct: 6 MFILDLKGKTIISRNYRGDIDMTAIDKF-IHLLMEKEEEGSAAPVLTYQDTNFVFIKHTN 64
Query: 334 IWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGYPQ 513
I+L + + NVN M+ FL K ++V YF + EE++++NFV+IYELLDE++DFG+PQ
Sbjct: 65 IYLVSACRSNVNVTMILSFLYKCVEVFSEYFKDVEEESVRDNFVVIYELLDEMMDFGFPQ 124
Query: 514 NSDTGVLKTFITQQG 558
+++ +L+ +ITQ+G
Sbjct: 125 TTESRILQEYITQEG 139
>L26291-1|AAA72418.1| 422|Caenorhabditis elegans protein (
Caenorhabditis elegans(unc-101) mRNA, complete cds. ).
Length = 422
Score = 123 bits (296), Expect = 1e-28
Identities = 55/135 (40%), Positives = 91/135 (67%), Gaps = 2/135 (1%)
Frame = +1
Query: 160 LFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRS--PVTNIARTSFFHIKRAN 333
+F+ + KG+ +ISR YR DI A+D F ++++ +++ S PV T+F IK N
Sbjct: 6 MFILDLKGKTIISRNYRGDIDMTAIDKF-IHLLMEKEEEGSAAPVLTYQDTNFVFIKHTN 64
Query: 334 IWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGYPQ 513
I+L + + NVN M+ FL K ++V YF + EE++++NFV+IYELLDE++DFG+PQ
Sbjct: 65 IYLVSACRSNVNVTMILSFLYKCVEVFSEYFKDVEEESVRDNFVVIYELLDEMMDFGFPQ 124
Query: 514 NSDTGVLKTFITQQG 558
+++ +L+ +ITQ+G
Sbjct: 125 TTESRILQEYITQEG 139
>AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin,
mu/medium chain (clathrinassociated complex) protein 1
protein.
Length = 426
Score = 121 bits (292), Expect = 3e-28
Identities = 57/137 (41%), Positives = 88/137 (64%), Gaps = 1/137 (0%)
Frame = +1
Query: 151 IGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQ-VRSPVTNIARTSFFHIKR 327
I GLF+ + KG V+ISR YR D+ + ++ F ++ + SPV S+ +IK
Sbjct: 3 ISGLFILDLKGNVVISRNYRGDVDMSCIEKFMPLLVEKEDEGSASPVLVHQGISYTYIKY 62
Query: 328 ANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGY 507
N++L ++K+N N +V L KI++V YF + EE +++NFV+IYEL DE+LDFGY
Sbjct: 63 MNVYLVTISKKNTNVILVLSALYKIVEVFCEYFKTLEEEAVRDNFVIIYELFDEMLDFGY 122
Query: 508 PQNSDTGVLKTFITQQG 558
PQ +++ +L+ FITQQG
Sbjct: 123 PQTTESKILQEFITQQG 139
>U41023-4|AAA82343.2| 414|Caenorhabditis elegans Adaptin, mu/medium
chain (clathrinassociated complex) protein 3 protein.
Length = 414
Score = 74.9 bits (176), Expect = 4e-14
Identities = 41/136 (30%), Positives = 71/136 (52%), Gaps = 3/136 (2%)
Frame = +1
Query: 148 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAF---RVNVIHARQQVRSPVTNIARTSFFH 318
M+ LF N G+VL+ + ++ I R+ D F + IH P+ + +
Sbjct: 1 MLNSLFFVNSSGDVLLEKHWKSVIHRSICDYFFDIQKKSIHPEDV--PPIISTPHHYLIN 58
Query: 319 IKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILD 498
+ + N++L AV MV EFL ++I YF + S+ ++K N V+++ELLDE+LD
Sbjct: 59 VYQNNLFLVAVITVETPPLMVIEFLHRVIQTFTQYFDEFSDSSMKENCVMVFELLDEMLD 118
Query: 499 FGYPQNSDTGVLKTFI 546
G+P ++ +L+ I
Sbjct: 119 NGFPLVTEMNILQDLI 134
>AF016440-4|AAB65902.1| 157|Caenorhabditis elegans Adaptin, small
chain (clathrinassociated complex) protein 1 protein.
Length = 157
Score = 41.9 bits (94), Expect = 3e-04
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Frame = +1
Query: 328 ANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFG- 504
A+++ +QN N + E + + ++++ YFG + E +I NF Y +LDE L G
Sbjct: 63 ASLYFCCAIEQNDNELITLEVIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLAGE 122
Query: 505 YPQNSDTGVLKTFITQ 552
+ S VLK Q
Sbjct: 123 IQETSKKQVLKAIAAQ 138
>U21309-2|AAN73882.1| 515|Caenorhabditis elegans Hypothetical
protein C13B9.3 protein.
Length = 515
Score = 39.9 bits (89), Expect = 0.001
Identities = 33/133 (24%), Positives = 65/133 (48%), Gaps = 7/133 (5%)
Frame = +1
Query: 166 VYNHKGEVLISRVYRDDIGRNA----VDAFRVNVIHARQQVRSPVTNIARTSFFHIKRA- 330
+ + G++L++R + +D+ R+ VDAF + + ++ T + S ++
Sbjct: 8 ILSKTGKLLVARQFVNDMMRSRLEGLVDAFPKLIGNEKEAATRQHTFVETDSVRYVYHPL 67
Query: 331 -NIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENI-KNNFVLIYELLDEILDFG 504
NI+L VT +N N E L + V+ Y E+ I ++F LI+ DE++ G
Sbjct: 68 DNIYLVLVTTKNSNILEDLETLRLFVRVIPEYCRSNEEKEILAHDFDLIF-AFDEVVTLG 126
Query: 505 YPQNSDTGVLKTF 543
Y ++ + ++TF
Sbjct: 127 YRESVNLAQIRTF 139
>U53340-2|AAA96207.1| 142|Caenorhabditis elegans Ap-2 small chain
(clathrin associatedcomplex) protein 2 protein.
Length = 142
Score = 34.7 bits (76), Expect = 0.048
Identities = 33/140 (23%), Positives = 59/140 (42%), Gaps = 7/140 (5%)
Frame = +1
Query: 148 MIGGLFVYNHKGEVLISRVYR--DDIGRNAVDAFRVNVIHARQQVRSPV-TNIARTSFFH 318
MI + + N G+ +++ Y DD + + + +HA VR TN F
Sbjct: 1 MIRFILIQNRAGKTRLAKWYMHFDDDEKQKL----IEEVHACVTVRDAKHTNFVEFRNFK 56
Query: 319 I---KRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDE 489
I + A ++ N E + ++V+ YF + E ++ NF +Y ++DE
Sbjct: 57 IVYRRYAGLYFCICVDITDNNLYYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDE 116
Query: 490 ILDFG-YPQNSDTGVLKTFI 546
+ G + S T VLK +
Sbjct: 117 MFLAGEIRETSQTKVLKQLL 136
>Z74028-3|CAA98425.1| 1908|Caenorhabditis elegans Hypothetical protein
C14C10.5 protein.
Length = 1908
Score = 30.7 bits (66), Expect = 0.79
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +1
Query: 193 ISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFF 315
+ R++RDDIG V++ N I R++ ++ + + FF
Sbjct: 1761 VFRIHRDDIGMILVNSLNDNQIEVRERATDALSTLLQAKFF 1801
>U21309-6|AAT92086.1| 541|Caenorhabditis elegans Hypothetical
protein C13B9.4c protein.
Length = 541
Score = 28.7 bits (61), Expect = 3.2
Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 8/107 (7%)
Frame = +1
Query: 286 VTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENI----- 450
+ N+ R + ++ +N A K++V AAM+ LL + ++MQ+ + +NI
Sbjct: 350 ICNVIRVLYSKVRESNNTSEAGLKKSVKAAMMLLPLLGVPNIMQTIPFAPTRDNIMVFAV 409
Query: 451 ---KNNFVLIYELLDEILDFGYPQNSDTGVLKTFITQQGIXSASKEE 582
+F +Y+ L + + VLKTF + + S+ E
Sbjct: 410 WTYTASFTYMYQGLMVASIYCFTNKEVNHVLKTFYARYRLLHKSQNE 456
>U21309-5|AAT92085.1| 536|Caenorhabditis elegans Hypothetical
protein C13B9.4b protein.
Length = 536
Score = 28.7 bits (61), Expect = 3.2
Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 8/107 (7%)
Frame = +1
Query: 286 VTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENI----- 450
+ N+ R + ++ +N A K++V AAM+ LL + ++MQ+ + +NI
Sbjct: 340 ICNVIRVLYSKVRESNNTSEAGLKKSVKAAMMLLPLLGVPNIMQTIPFAPTRDNIMVFAV 399
Query: 451 ---KNNFVLIYELLDEILDFGYPQNSDTGVLKTFITQQGIXSASKEE 582
+F +Y+ L + + VLKTF + + S+ E
Sbjct: 400 WTYTASFTYMYQGLMVASIYCFTNKEVNHVLKTFYARYRLLHKSQNE 446
>U21309-4|AAN73883.1| 546|Caenorhabditis elegans Hypothetical
protein C13B9.4a protein.
Length = 546
Score = 28.7 bits (61), Expect = 3.2
Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 8/107 (7%)
Frame = +1
Query: 286 VTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENI----- 450
+ N+ R + ++ +N A K++V AAM+ LL + ++MQ+ + +NI
Sbjct: 350 ICNVIRVLYSKVRESNNTSEAGLKKSVKAAMMLLPLLGVPNIMQTIPFAPTRDNIMVFAV 409
Query: 451 ---KNNFVLIYELLDEILDFGYPQNSDTGVLKTFITQQGIXSASKEE 582
+F +Y+ L + + VLKTF + + S+ E
Sbjct: 410 WTYTASFTYMYQGLMVASIYCFTNKEVNHVLKTFYARYRLLHKSQNE 456
>AY314778-1|AAQ84885.1| 546|Caenorhabditis elegans calcitonin
receptor-like proteinSEB-1C protein.
Length = 546
Score = 28.7 bits (61), Expect = 3.2
Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 8/107 (7%)
Frame = +1
Query: 286 VTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENI----- 450
+ N+ R + ++ +N A K++V AAM+ LL + ++MQ+ + +NI
Sbjct: 350 ICNVIRVLYSKVRESNNTSEAGLKKSVKAAMMLLPLLGVPNIMQTIPFAPTRDNIMVFAV 409
Query: 451 ---KNNFVLIYELLDEILDFGYPQNSDTGVLKTFITQQGIXSASKEE 582
+F +Y+ L + + VLKTF + + S+ E
Sbjct: 410 WTYTASFTYMYQGLMVASIYCFTNKEVNHVLKTFYARYRLLHKSQNE 456
>AY314777-1|AAQ84884.1| 541|Caenorhabditis elegans calcitonin
receptor-like proteinSEB-1B protein.
Length = 541
Score = 28.7 bits (61), Expect = 3.2
Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 8/107 (7%)
Frame = +1
Query: 286 VTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENI----- 450
+ N+ R + ++ +N A K++V AAM+ LL + ++MQ+ + +NI
Sbjct: 350 ICNVIRVLYSKVRESNNTSEAGLKKSVKAAMMLLPLLGVPNIMQTIPFAPTRDNIMVFAV 409
Query: 451 ---KNNFVLIYELLDEILDFGYPQNSDTGVLKTFITQQGIXSASKEE 582
+F +Y+ L + + VLKTF + + S+ E
Sbjct: 410 WTYTASFTYMYQGLMVASIYCFTNKEVNHVLKTFYARYRLLHKSQNE 456
>AY314776-1|AAQ84883.1| 536|Caenorhabditis elegans calcitonin
receptor-like proteinSEB-1A protein.
Length = 536
Score = 28.7 bits (61), Expect = 3.2
Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 8/107 (7%)
Frame = +1
Query: 286 VTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENI----- 450
+ N+ R + ++ +N A K++V AAM+ LL + ++MQ+ + +NI
Sbjct: 340 ICNVIRVLYSKVRESNNTSEAGLKKSVKAAMMLLPLLGVPNIMQTIPFAPTRDNIMVFAV 399
Query: 451 ---KNNFVLIYELLDEILDFGYPQNSDTGVLKTFITQQGIXSASKEE 582
+F +Y+ L + + VLKTF + + S+ E
Sbjct: 400 WTYTASFTYMYQGLMVASIYCFTNKEVNHVLKTFYARYRLLHKSQNE 446
>U80027-19|AAC48129.2| 313|Caenorhabditis elegans F-box a protein
protein 64 protein.
Length = 313
Score = 28.3 bits (60), Expect = 4.2
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 133 EASPTMIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIH 261
+++P I +F ++ G S Y DDI + A+D FRV H
Sbjct: 264 QSNPVDIAKVFKPDYVGGNEYSFEYSDDIHKFAIDCFRVGESH 306
>AL132862-5|CAB70227.1| 419|Caenorhabditis elegans Hypothetical
protein Y73F8A.9 protein.
Length = 419
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +3
Query: 231 CGRIQSECDPCSPAGAITCYQHCTHIFLPYQACKYLAGSSHKAKCERGH 377
C + Q C+PA +CYQ C+ L C L S + C++ +
Sbjct: 361 CIQQQQPMQQCAPACTQSCYQSCSTAQLVQMPC--LTQSVNSCSCQQNY 407
>AL132862-4|CAB60533.1| 420|Caenorhabditis elegans Hypothetical
protein Y73F8A.8 protein.
Length = 420
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +3
Query: 231 CGRIQSECDPCSPAGAITCYQHCTHIFLPYQACKYLAGSSHKAKCERGH 377
C + Q C+PA +CYQ C+ L C L S + C++ +
Sbjct: 362 CIQQQQPMQQCAPACTQSCYQSCSTAQLVQMPC--LTQSVNSCSCQQNY 408
>U13642-9|AAG00035.1| 187|Caenorhabditis elegans Clock (biological
timing) abnormalityprotein 1 protein.
Length = 187
Score = 27.9 bits (59), Expect = 5.6
Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 2/102 (1%)
Frame = -1
Query: 522 IRILRVTKVQDLIKQLIDQNKVILDVLFRNLAKIRLHH--INDLQQELKYHGRVHILLCD 349
+ +L+ + V +IK++ D+ K LD + R AK + H + + Y V L
Sbjct: 41 LAVLQGSSVGSVIKKMWDEEKEHLDTMERLAAKHNVPHTVFSPVFSVAAYALGVGSALLG 100
Query: 348 CCQPNICTLDMEERCACNVGNR*SHLLASMDHIHSECVHSIT 223
CT+ +EE + ++ LLA H E + +T
Sbjct: 101 KEGAMACTIAVEELIGQHYNDQLKELLADDPETHKELLKILT 142
>Z70686-9|CAA94614.3| 915|Caenorhabditis elegans Hypothetical
protein R10H10.7 protein.
Length = 915
Score = 27.5 bits (58), Expect = 7.4
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 331 NIWLAAVTKQNVNAAMVFEFLLKIIDVMQS 420
++++ A+ + + A V FLLKI DV++S
Sbjct: 113 HMYMDAIPRDSPGATKVLNFLLKIFDVLKS 142
>AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta
family protein 3 protein.
Length = 1092
Score = 27.5 bits (58), Expect = 7.4
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Frame = -1
Query: 366 HILLCDCCQPNICTLDMEERCACNVGNR*SHLLASMDHIHSECVHSITTNIISVDSRDQH 187
H L + N L + C GNR +H L ++ + +C+ + I + R
Sbjct: 133 HCLKSEDLTGNYIALLILRGCPIIFGNRLAHFLPTLKVVLEKCMATPDLQIKATAVR-AV 191
Query: 186 LAFMVVNEQASDHCR*GLTLFQNWFQ-CN 103
+AF V N++ D R +L N Q CN
Sbjct: 192 IAFAVDNDEEKDVVRLMTSLVPNVLQVCN 220
>U41109-7|AAQ62450.1| 1045|Caenorhabditis elegans Guanylyl cyclase
protein 7, isoforma protein.
Length = 1045
Score = 27.1 bits (57), Expect = 9.7
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = +1
Query: 235 DAFRVNVIHARQQVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVM 414
+ RV IH R +P+T RTS A+I + + ++N+ + F F ++ D +
Sbjct: 33 NVIRVGFIHCRDFQSAPITVGYRTS---AAAASIAVDRLKRENLMSGWEFNFTIEFDDCV 89
Query: 415 QS 420
+S
Sbjct: 90 ES 91
>U41109-6|AAQ62451.1| 1111|Caenorhabditis elegans Guanylyl cyclase
protein 7, isoformb protein.
Length = 1111
Score = 27.1 bits (57), Expect = 9.7
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = +1
Query: 235 DAFRVNVIHARQQVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVM 414
+ RV IH R +P+T RTS A+I + + ++N+ + F F ++ D +
Sbjct: 33 NVIRVGFIHCRDFQSAPITVGYRTS---AAAASIAVDRLKRENLMSGWEFNFTIEFDDCV 89
Query: 415 QS 420
+S
Sbjct: 90 ES 91
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,501,844
Number of Sequences: 27780
Number of extensions: 288425
Number of successful extensions: 883
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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