BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV11j05r (761 letters) Database: uniref50 1,657,284 sequences; 575,637,011 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value UniRef50_UPI0000ECD492 Cluster: IGSF5 protein; n=3; Gallus gallu... 36 1.1 UniRef50_Q8NEZ3 Cluster: WD repeat-containing protein 19; n=38; ... 33 5.8 >UniRef50_UPI0000ECD492 Cluster: IGSF5 protein; n=3; Gallus gallus|Rep: IGSF5 protein - Gallus gallus Length = 283 Score = 35.9 bits (79), Expect = 1.1 Identities = 23/55 (41%), Positives = 31/55 (56%) Frame = -1 Query: 176 LIQSLSVLLFTPVTTATLRYVNDEEPTPSTSSGATINLI*GVALLENDSDDGDTS 12 L +LSVL TP+ T L + D E PS + ATI +I G + LEN+ + TS Sbjct: 182 LYNALSVLTLTPMDTEILTCLADIEALPSPQN-ATIAVIVGNSTLENNYSEDSTS 235 >UniRef50_Q8NEZ3 Cluster: WD repeat-containing protein 19; n=38; root|Rep: WD repeat-containing protein 19 - Homo sapiens (Human) Length = 1342 Score = 33.5 bits (73), Expect = 5.8 Identities = 20/51 (39%), Positives = 26/51 (50%) Frame = +3 Query: 522 DKCRVLSEMSFKPNKLLTLDILLYIVETNVCGYFYI*YKEFNKDSKRPFAV 674 DKCR+L LT D L+Y +T V YFYI +F D + P +V Sbjct: 474 DKCRILCHA-------LTSDFLIYGTDTGVVQYFYIEDWQFVNDYRHPVSV 517 Database: uniref50 Posted date: Oct 5, 2007 11:19 AM Number of letters in database: 575,637,011 Number of sequences in database: 1,657,284 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 691,175,558 Number of Sequences: 1657284 Number of extensions: 12661883 Number of successful extensions: 25524 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 24544 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 25517 length of database: 575,637,011 effective HSP length: 99 effective length of database: 411,565,895 effective search space used: 63381147830 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -