Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11j05r
         (761 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)              29   3.1  
SB_9539| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.1  
SB_26962| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_11956| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  

>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
          Length = 972

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 268 CYYCFKFSFCYGFYSFKFVC 209
           CYYC  + +CY +Y   + C
Sbjct: 496 CYYCCYYCYCYYYYHHYYCC 515



 Score = 27.9 bits (59), Expect = 9.5
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -2

Query: 295 CLY*VFVTSCYYCFKFSFCYGFY 227
           C Y  +    YYC+ + +CY +Y
Sbjct: 476 CYYYCYCYCYYYCYYYCYCYCYY 498


>SB_9539| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1642

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -1

Query: 746 YSLDSLRLCFRVHLYLSFPRFTCYDRERT 660
           Y++  ++LC RV  Y    +FT Y+++RT
Sbjct: 491 YAIKIVQLCQRVSCYQKVDKFTVYNKKRT 519


>SB_26962| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 333

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +3

Query: 582 ILLYIVETNVCGYFYI*YKEFNKDSKRPFAVITSETWK 695
           I++ I ETN+  YF   Y+ ++ D +R    + S+ W+
Sbjct: 253 IIIIITETNIIMYFSDHYQYYDDDHQRLQTYLQSDLWQ 290


>SB_11956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 832

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +2

Query: 386 NRALGTVLPFPASRLTTKET*KTTSAHLTTLAKL 487
           NRAL    P PAS +T  ET  T    + +LA+L
Sbjct: 799 NRALVAATPLPASGVTANETPGTIHFKVASLARL 832


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,540,393
Number of Sequences: 59808
Number of extensions: 404675
Number of successful extensions: 812
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)