Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11j05r
         (761 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13960.1 68416.m01762 expressed protein identical to transcri...    29   4.5  
At2g26830.1 68415.m03219 choline/ethanolamine kinase family prot...    28   5.9  

>At3g13960.1 68416.m01762 expressed protein identical to
           transcription activator GRL5 [Arabidopsis thaliana]
           GI:21539888 (unpublished); supporting cDNA
           gi|21539887|gb|AY102638.1|
          Length = 397

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -1

Query: 146 TPVTTATLRYVNDEEPTPSTSSGATIN 66
           TP+T+ +L + N+  P+P+ SS ++ N
Sbjct: 131 TPLTSPSLSFTNNNNPSPTLSSSSSSN 157


>At2g26830.1 68415.m03219 choline/ethanolamine kinase family protein
           similar to SP|Q9HBU6 Ethanolamine kinase (EC 2.7.1.82)
           (EKI){Homo sapiens}, GmCK3p [Glycine max] GI:1438883;
           contains Pfam profile PF01633: Choline/ethanolamine
           kinase
          Length = 374

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 597 VETNVCGYFYI*YKEFNKDSKRPFAVITS 683
           +E    GYF++ Y E+ K     F+++TS
Sbjct: 340 IEFEYLGYFFLRYNEYKKQKPLTFSLVTS 368


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,983,355
Number of Sequences: 28952
Number of extensions: 283234
Number of successful extensions: 540
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)