Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11j03r
         (551 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa...   188   4e-49
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac...   188   4e-49
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    30   0.20 
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    26   3.2  
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    26   4.2  
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ...    25   5.6  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    25   7.4  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   9.8  
SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr 1|...    25   9.8  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    25   9.8  
SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|c...    25   9.8  

>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
           L19B|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 193

 Score =  188 bits (459), Expect = 4e-49
 Identities = 86/158 (54%), Positives = 114/158 (72%)
 Frame = -2

Query: 550 VMRCVKKKVWLDPNEINEIANTNSXQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKG 371
           V++C K+KVW+DPNEI+EI+N NS QNIRK++KDGLVI+KP  +HSR R+RK   A+R G
Sbjct: 14  VLKCGKRKVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSRFRIRKTHAAKRLG 73

Query: 370 RHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXRTAKKIDRHLYHSLYMKAKGNVFK 191
           RH G+GKR+GTA ARMP   +W              R + KID+HLYH+LY++AKGN FK
Sbjct: 74  RHTGYGKRKGTAEARMPSTVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLYLEAKGNTFK 133

Query: 190 NKRVLMEYIHRKKAEKARTKMLSDQAEAXRNKVKEASQ 77
           +KR L+E+I R KAE  RTK++ +Q +A R + K A Q
Sbjct: 134 HKRALIEHIQRAKAEANRTKLIQEQQDARRARAKAARQ 171


>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
           L19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 193

 Score =  188 bits (459), Expect = 4e-49
 Identities = 86/158 (54%), Positives = 114/158 (72%)
 Frame = -2

Query: 550 VMRCVKKKVWLDPNEINEIANTNSXQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKG 371
           V++C K+KVW+DPNEI+EI+N NS QN+RK+IKDGLVI+KP  +HSR R+RK   A+R G
Sbjct: 14  VLKCGKRKVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSRFRIRKTHAAKRLG 73

Query: 370 RHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXRTAKKIDRHLYHSLYMKAKGNVFK 191
           RH G+GKR+GTA ARMP   +W              R + KID+HLYH+LY++AKGN FK
Sbjct: 74  RHTGYGKRKGTAEARMPSAVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLYLEAKGNTFK 133

Query: 190 NKRVLMEYIHRKKAEKARTKMLSDQAEAXRNKVKEASQ 77
           +KR L+E+I R KAE  RTK++ +Q +A R + K A Q
Sbjct: 134 HKRALIEHIQRAKAEANRTKLIQEQQDARRARAKAARQ 171


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 30.3 bits (65), Expect = 0.20
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +2

Query: 446 TILDHLTDVLXGVGVCDLIDFIXIQPHLLFNTS 544
           +I +H++DV  G+ V  LI+ + I+P +LF  +
Sbjct: 351 SICEHVSDVSRGIAVETLIELMIIRPKILFKAN 383


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 310 VPSVAYAHWQYLFSYQS 360
           +PSV YA WQ L  Y S
Sbjct: 255 IPSVCYAAWQLLAKYDS 271


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +3

Query: 150 AFFLWMYSMSTRLFLNTLPFAFM-*SEWYRCL 242
           AF LW+YS+   L+L       +    W++CL
Sbjct: 337 AFVLWVYSLDKELWLQLDMLGVLNHGSWFKCL 368


>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 11/65 (16%)
 Frame = -2

Query: 529 KVWLDPNEINEIANTNSXQNIRKMIKDGLVIKK-----------PVAVHSRARVRKNTEA 383
           K WLDP  ++++  T + +++++ I    ++K+           P    + A   KN EA
Sbjct: 289 KSWLDPVVVSKVKFTRNYRDLQQYINPDNILKEFGGPNPWRYTYPEPCQNEAEALKNVEA 348

Query: 382 RRKGR 368
           R+  R
Sbjct: 349 RKSLR 353


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -2

Query: 475 QNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 359
           +++R  +KD +   +PV+V S A   ++T     G   G
Sbjct: 141 ESLRSKLKDAMASTEPVSVDSAAAPSQSTNPEGNGGSVG 179


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 8/33 (24%), Positives = 20/33 (60%)
 Frame = -2

Query: 487  TNSXQNIRKMIKDGLVIKKPVAVHSRARVRKNT 389
            T S   ++ +IK+    +KP    ++++++KN+
Sbjct: 912  TESLNQVKNLIKNDTSNRKPFGAENQSKLKKNS 944


>SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 443 ETILDHLTDVLXGVGVCDLIDFIXIQPH 526
           +TI D    +  G  +C+L +FI + PH
Sbjct: 145 KTIRDPKLSIYVGRRLCELHNFILLHPH 172


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = +2

Query: 110 LSLVAKHLRPGLLSLLPVDVLHEHTLVLEHITLRLHV 220
           LSL  K +   + +LL + + H HTLV E +TL+L V
Sbjct: 324 LSLPVKSVESSVQALLFMVLPHLHTLVNE-LTLKLFV 359


>SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 346 FSYQSHSDDPFYVPLCFCGHGR 411
           FS  + +D+P Y P+  CG G+
Sbjct: 37  FSQCAITDEPLYPPIVSCGLGK 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,135,600
Number of Sequences: 5004
Number of extensions: 42191
Number of successful extensions: 126
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)