Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11j03r
         (551 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)              237   3e-63
SB_24692| Best HMM Match : Disintegrin (HMM E-Value=7.6e-23)           31   0.47 
SB_28528| Best HMM Match : TUDOR (HMM E-Value=0.34)                    31   0.63 
SB_26423| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_35269| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_37049| Best HMM Match : Acylphosphatase (HMM E-Value=0.82)          29   3.3  
SB_20414| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_13365| Best HMM Match : PKD_channel (HMM E-Value=1.4e-25)           28   5.8  
SB_51402| Best HMM Match : Peptidase_M13_N (HMM E-Value=1.9e-12)       27   7.7  
SB_40416| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_1172| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.7  

>SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score =  237 bits (581), Expect = 3e-63
 Identities = 112/158 (70%), Positives = 126/158 (79%)
 Frame = -2

Query: 550 VMRCVKKKVWLDPNEINEIANTNSXQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKG 371
           +++C KKK+WLDPNE NEIAN NS QN+RK+IKDGL+IKKP  VHSRARVRK  EAR KG
Sbjct: 42  LLKCGKKKIWLDPNECNEIANANSRQNVRKLIKDGLIIKKPEIVHSRARVRKADEARSKG 101

Query: 370 RHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXRTAKKIDRHLYHSLYMKAKGNVFK 191
           RH G GKR+GTANARMPQK +W              R AKKID H+YHSLYMK+KGNVFK
Sbjct: 102 RHSGHGKRKGTANARMPQKTIWIRRMRVLRRLLRKYREAKKIDNHMYHSLYMKSKGNVFK 161

Query: 190 NKRVLMEYIHRKKAEKARTKMLSDQAEAXRNKVKEASQ 77
           NKRVLMEYIH+KKAEKAR+K+LSDQAEA RNK K A Q
Sbjct: 162 NKRVLMEYIHKKKAEKARSKLLSDQAEARRNKNKAAKQ 199


>SB_24692| Best HMM Match : Disintegrin (HMM E-Value=7.6e-23)
          Length = 1592

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 18/62 (29%), Positives = 22/62 (35%)
 Frame = -2

Query: 190  NKRVLMEYIHRKKAEKARTKMLSDQAEAXRNKVKEASQAPRGTYCRQEGGNCCRPSLEXT 11
            NK VL  Y   K   K  +       +   N     +  PRG+  R  GG C RP     
Sbjct: 1458 NKLVLDMYFKGKSPPKPASSSTPTAPKTTTNPATPTAVRPRGSPIRARGGFCLRPESADC 1517

Query: 10   KP 5
             P
Sbjct: 1518 SP 1519


>SB_28528| Best HMM Match : TUDOR (HMM E-Value=0.34)
          Length = 736

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -2

Query: 196 FKNKRVLMEYIHRKKAEKARTKMLSDQAEAXRNKVKEASQAP 71
           F+  +  MEY  +   EKA  K+   Q++A R K+  + QAP
Sbjct: 80  FQKAKEAMEYARKSATEKAAEKIQDIQSQAARIKLTVSIQAP 121


>SB_26423| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -2

Query: 412 RARVRKNTEARRKGRHCGFGKRRGTANAR 326
           +A  RK    RR+ R  G  K+R TANAR
Sbjct: 17  KANSRKKRRRRRRPRLTGLSKQRQTANAR 45


>SB_35269| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 172

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +1

Query: 283 LEPFVFVPIVPSVAY--AHWQYLFSYQSHSDDPFYVPLCFCGH 405
           ++ + F+P    V +    W++  ++  H+DDPF V    C H
Sbjct: 72  IKDYSFLPCCFKVCHRTCFWRWAHNHSIHADDPFEVACPHCRH 114


>SB_37049| Best HMM Match : Acylphosphatase (HMM E-Value=0.82)
          Length = 646

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +1

Query: 283 LEPFVFVPIVPSVAY--AHWQYLFSYQSHSDDPFYVPLCFCGH 405
           ++ + F+P    V +    W++  ++  H+DDPF V    C H
Sbjct: 72  IKDYSFLPCCFKVCHRTCFWRWAHNHSIHADDPFEVACPHCRH 114


>SB_20414| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +1

Query: 235 DACQSSWQFCTSGAIFLEPF-VFVPIVPSVAYAHW 336
           D  + S Q C     FLEP  VF P+ PS A+AH+
Sbjct: 192 DIVEKSQQACREHEAFLEPMGVFSPLPPS-AHAHF 225


>SB_13365| Best HMM Match : PKD_channel (HMM E-Value=1.4e-25)
          Length = 2146

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +3

Query: 66   PRGACDASFTLLRXASAWSLSIFVLAFSAFFLWMYSM 176
            PRG+C  +  +L    AW L   V+  SA F+  YSM
Sbjct: 1494 PRGSCLTAINIL----AWFLCASVILLSAVFVVFYSM 1526


>SB_51402| Best HMM Match : Peptidase_M13_N (HMM E-Value=1.9e-12)
          Length = 1206

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 220 RVSGIDACQSSWQFCTSGAIFLEPFVF 300
           RV+G+    S WQ CT+ A  L+  VF
Sbjct: 493 RVAGVKKSPSRWQQCTNAANNLDGLVF 519


>SB_40416| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 634

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = +3

Query: 45  PSWRQYVPRGA---CDASFTLLRXASAWSLSIFV 137
           P W++ V  G+   CD +FT     ++W +S F+
Sbjct: 119 PRWKRDVSSGSYSVCDLAFTQTNSTNSWQVSEFI 152


>SB_1172| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 184

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/58 (18%), Positives = 23/58 (39%)
 Frame = +3

Query: 9   FVXSSEGLQQFPPSWRQYVPRGACDASFTLLRXASAWSLSIFVLAFSAFFLWMYSMST 182
           F   ++   ++  +W+  +    C   +      S W  S+ V+  S   LW+   S+
Sbjct: 97  FTKRNDSKYEYREAWKAQLADCHCTVYYLCFNIRSTWVESLLVITLSRGILWVLEFSS 154


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,784,988
Number of Sequences: 59808
Number of extensions: 344973
Number of successful extensions: 1032
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)