Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11j03r
         (551 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal pro...   201   3e-52
Z66519-6|CAA91374.3|  394|Caenorhabditis elegans Hypothetical pr...    36   0.015
Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical pr...    31   0.42 
Z81063-1|CAB02952.1|  376|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z77652-12|CAI70406.1|  310|Caenorhabditis elegans Hypothetical p...    27   6.8  
AL132948-22|CAD31825.2| 1408|Caenorhabditis elegans Hypothetical...    27   6.8  
AL132948-15|CAD31816.1| 1352|Caenorhabditis elegans Hypothetical...    27   9.0  

>AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 19 protein.
          Length = 198

 Score =  201 bits (490), Expect = 3e-52
 Identities = 91/156 (58%), Positives = 117/156 (75%)
 Frame = -2

Query: 550 VMRCVKKKVWLDPNEINEIANTNSXQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKG 371
           V++C K +VWLDPNE++EI+  NS Q+IR+++ DGL+I+KPV VHSR R R+  EARRKG
Sbjct: 14  VLKCGKHRVWLDPNEVSEISGANSRQSIRRLVNDGLIIRKPVTVHSRFRAREYEEARRKG 73

Query: 370 RHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXRTAKKIDRHLYHSLYMKAKGNVFK 191
           RH G+GKRRGTANARMP+K LW              R AKK+D+HLYH LY++AKGN FK
Sbjct: 74  RHTGYGKRRGTANARMPEKTLWIRRMRVLRNLLRRYRDAKKLDKHLYHELYLRAKGNNFK 133

Query: 190 NKRVLMEYIHRKKAEKARTKMLSDQAEAXRNKVKEA 83
           NK+ L+EYI +KK E  R K L+DQA+A R+K KE+
Sbjct: 134 NKKNLIEYIFKKKTENKRAKQLADQAQARRDKNKES 169


>Z66519-6|CAA91374.3|  394|Caenorhabditis elegans Hypothetical
           protein B0334.6 protein.
          Length = 394

 Score = 36.3 bits (80), Expect = 0.015
 Identities = 27/95 (28%), Positives = 38/95 (40%)
 Frame = +3

Query: 45  PSWRQYVPRGACDASFTLLRXASAWSLSIFVLAFSAFFLWMYSMSTRLFLNTLPFAFM*S 224
           PSW   +    CD+ F +        LSI  LAFS  F   YS    L++ TL   F  S
Sbjct: 77  PSWNLLIALAVCDSLFLIFATLDVTPLSIPSLAFSTSFNHFYSRIV-LYIRTLASTFYKS 135

Query: 225 EWYRCLSIFLAVLYFRSNFLRTLCLCTHSSFCGIR 329
                 S+ + V +    +L  +C      +C  R
Sbjct: 136 ------SVLIVVAFNIERYLCVVCPLNSHRWCTSR 164


>Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical protein
            ZC373.4 protein.
          Length = 1211

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = -2

Query: 493  ANTNSXQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 359
            ++T+S +N+R ++ D   +K  V  H     R ++E R+K R  G
Sbjct: 1055 SDTSSSKNVRILLTDEQSVKSSVRSHPSVSTRDSSEERKKVRFAG 1099


>Z81063-1|CAB02952.1|  376|Caenorhabditis elegans Hypothetical
           protein F15D3.2 protein.
          Length = 376

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 42  PPSWRQYVPRGACDASFTLLRXASAWSLS 128
           P SW QY P+G C    TL    ++WS++
Sbjct: 221 PNSWHQYQPKGTCIQPVTL---PASWSIA 246


>Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical
           protein ZK1058.5 protein.
          Length = 269

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -2

Query: 481 SXQNIRKMIK-DGLVIKKPVAVHSRARVRKNTEARRKGR 368
           S +N+RKMIK  G V+ +   ++  A +R   EAR   R
Sbjct: 170 SAENVRKMIKIGGSVVVRDYGINDHAMIRFGREARISDR 208


>Z77652-12|CAI70406.1|  310|Caenorhabditis elegans Hypothetical
           protein C06B3.14 protein.
          Length = 310

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = +1

Query: 253 WQFCTSGAIFLEPFVFVPIVPSVAYAHWQYLFSYQSHSD-DPFYVPLCFCGHGR 411
           W +C   A+FL    F+P     A  +  Y F Y S  D D   + L F  + R
Sbjct: 126 WLYCLGLAMFLLILFFIPFFGGCADNYSFYDFDYTSECDPDDHPITLMFDEYAR 179


>AL132948-22|CAD31825.2| 1408|Caenorhabditis elegans Hypothetical
            protein Y39B6A.30 protein.
          Length = 1408

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 15/61 (24%), Positives = 29/61 (47%)
 Frame = -2

Query: 250  KIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEAXRNKVKEASQAP 71
            K+++    +   K K    +NK  +     R KAE+ + K+  ++ +A   K+K A +  
Sbjct: 938  KVEKEKVKAEEEKVKVEKERNKEKVKAEEERLKAEEEKVKIEKEKVKAEEQKIKAAEEER 997

Query: 70   R 68
            R
Sbjct: 998  R 998


>AL132948-15|CAD31816.1| 1352|Caenorhabditis elegans Hypothetical
            protein Y39B6A.18 protein.
          Length = 1352

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -2

Query: 214  KAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEAXRNKVKEASQAPR 68
            K K    +NK  +     R KAE+ + K+  ++ +A   K+K A +  R
Sbjct: 911  KVKVEKERNKEKVKAEEERLKAEEEKVKIEKEKVKAEEQKIKSAEEERR 959


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,162,342
Number of Sequences: 27780
Number of extensions: 253678
Number of successful extensions: 813
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)