Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11j03r
(551 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) simi... 196 8e-51
At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) simi... 196 1e-50
At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) simi... 193 8e-50
At4g16030.1 68417.m02432 60S ribosomal protein L19, putative sim... 46 2e-05
At1g06230.2 68414.m00659 DNA-binding bromodomain-containing prot... 29 1.6
At1g06230.1 68414.m00658 DNA-binding bromodomain-containing prot... 29 1.6
At3g30842.1 68416.m03968 ABC transporter protein, putative simil... 29 2.7
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro... 28 3.6
At2g25320.1 68415.m03029 meprin and TRAF homology domain-contain... 28 4.8
At1g31820.1 68414.m03908 amino acid permease family protein weak... 28 4.8
At5g67310.1 68418.m08488 cytochrome P450 family protein 27 6.3
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 27 6.3
At3g28510.1 68416.m03561 AAA-type ATPase family protein contains... 27 6.3
At3g04340.1 68416.m00459 FtsH protease family protein similar to... 27 6.3
At2g32000.1 68415.m03910 DNA topoisomerase family protein simila... 27 6.3
At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol p... 27 8.3
At5g05020.1 68418.m00533 expressed protein 27 8.3
>At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) similar
to ribosomal protein L19 GB:CAA45090 from [Homo sapiens]
Length = 209
Score = 196 bits (478), Expect = 8e-51
Identities = 92/158 (58%), Positives = 112/158 (70%)
Frame = -2
Query: 550 VMRCVKKKVWLDPNEINEIANTNSXQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKG 371
VM+C K KVWLDPNE +I+ NS QNIRK++KDG +I+KP +HSR+R R EA+RKG
Sbjct: 14 VMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARALNEAKRKG 73
Query: 370 RHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXRTAKKIDRHLYHSLYMKAKGNVFK 191
RH G+GKR+GT AR+P K LW R +KKIDRH+YH +YMK KGNVFK
Sbjct: 74 RHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMYHDMYMKVKGNVFK 133
Query: 190 NKRVLMEYIHRKKAEKARTKMLSDQAEAXRNKVKEASQ 77
NKRVLME IH+ KAEKAR K L+DQ EA R K K + +
Sbjct: 134 NKRVLMESIHKMKAEKAREKTLADQFEAKRIKNKASRE 171
>At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) similar
to L19 from several species
Length = 208
Score = 196 bits (477), Expect = 1e-50
Identities = 91/158 (57%), Positives = 113/158 (71%)
Frame = -2
Query: 550 VMRCVKKKVWLDPNEINEIANTNSXQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKG 371
V++C K+KVWLDPNE ++I+ NS QNIRK++KDG +I+KP +HSR+R R+ A+RKG
Sbjct: 14 VLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARQLNIAKRKG 73
Query: 370 RHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXRTAKKIDRHLYHSLYMKAKGNVFK 191
RH G+GKR+GT AR+P K LW R KKIDRH+YH +YMK KGNVFK
Sbjct: 74 RHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMYHDMYMKVKGNVFK 133
Query: 190 NKRVLMEYIHRKKAEKARTKMLSDQAEAXRNKVKEASQ 77
NKRVLME IH+ KAEKAR K LSDQ EA R K K + +
Sbjct: 134 NKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRE 171
>At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) similar
to ribosomal protein L19 GI:36127 from [Homo sapiens]
Length = 214
Score = 193 bits (470), Expect = 8e-50
Identities = 90/158 (56%), Positives = 111/158 (70%)
Frame = -2
Query: 550 VMRCVKKKVWLDPNEINEIANTNSXQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKG 371
VM+C K KVWLDPNE ++I+ NS QNIRK++KDG +I+KP +HSR+R RK A+ KG
Sbjct: 14 VMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARKMKIAKMKG 73
Query: 370 RHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXRTAKKIDRHLYHSLYMKAKGNVFK 191
RH G+GKR+GT AR+P K LW R KKID+H+YH +YM+ KGNVFK
Sbjct: 74 RHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMYHDMYMRVKGNVFK 133
Query: 190 NKRVLMEYIHRKKAEKARTKMLSDQAEAXRNKVKEASQ 77
NKRVLME IH+ KAEKAR K LSDQ EA R K K + +
Sbjct: 134 NKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRE 171
>At4g16030.1 68417.m02432 60S ribosomal protein L19, putative
similar to 60S ribosomal protein L19-3
(Swiss-Prot:P49693) [Arabidopsis thaliana]
Length = 101
Score = 45.6 bits (103), Expect = 2e-05
Identities = 20/38 (52%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Frame = -2
Query: 253 KKIDRHLY-HSLYMKAKGNVFKNKRVLMEYIHRKKAEK 143
KKID+ +Y H ++MK KG V+KNK VLME +H+ E+
Sbjct: 29 KKIDKLVYYHDMFMKVKGKVYKNKCVLMESMHKSSRER 66
>At1g06230.2 68414.m00659 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 766
Score = 29.5 bits (63), Expect = 1.6
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = -2
Query: 157 KKAEKARTKMLSDQAEAXRNKVKEASQAPRGTYCRQEGGNCCRPSLEXTKP 5
KK KA + + +AEA RN ++ + AP +EGGN + +L P
Sbjct: 676 KKKRKAELAIQA-RAEAERNSQQQMAPAPAAHEFSREGGNTAKKTLPTPLP 725
>At1g06230.1 68414.m00658 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 766
Score = 29.5 bits (63), Expect = 1.6
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = -2
Query: 157 KKAEKARTKMLSDQAEAXRNKVKEASQAPRGTYCRQEGGNCCRPSLEXTKP 5
KK KA + + +AEA RN ++ + AP +EGGN + +L P
Sbjct: 676 KKKRKAELAIQA-RAEAERNSQQQMAPAPAAHEFSREGGNTAKKTLPTPLP 725
>At3g30842.1 68416.m03968 ABC transporter protein, putative similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, ABC1 protein [Nicotiana
plumbaginifolia] GI:14331118; contains Pfam profile
PF00005: ABC transporter
Length = 1406
Score = 28.7 bits (61), Expect = 2.7
Identities = 9/24 (37%), Positives = 19/24 (79%)
Frame = +3
Query: 117 WSLSIFVLAFSAFFLWMYSMSTRL 188
W +S+ ++AFS FF+++Y+ S ++
Sbjct: 1377 WVVSLTLIAFSMFFVFIYAFSVKI 1400
>At1g59910.1 68414.m06749 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02128
Length = 929
Score = 28.3 bits (60), Expect = 3.6
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -2
Query: 451 DGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTAN 332
D + KK + + + ++RKN + RR+G G G RR A+
Sbjct: 77 DVIYWKKLLELENSGKIRKNPKPRRRGDKSGDGFRRTGAD 116
>At2g25320.1 68415.m03029 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 1663
Score = 27.9 bits (59), Expect = 4.8
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 98 IAXGLSLVAKHLRPGLLSLLPVDVLH-EHTLVLEHITLRL 214
IA L KHL+P L+SL+P V H EH L + RL
Sbjct: 974 IALVLDRAPKHLQPDLVSLVPKLVEHSEHPLAALALIERL 1013
>At1g31820.1 68414.m03908 amino acid permease family protein weak
similarity to asc-type amino acid transporter 2 [Mus
musculus] GI:18148438; contains Pfam profile PF00324:
Amino acid permease
Length = 482
Score = 27.9 bits (59), Expect = 4.8
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 34 SSFLLLGGNTFLAALAMPPLLYCGG 108
S LLL G +F +A LLYCGG
Sbjct: 354 SGVLLLSGLSFQEIIAAENLLYCGG 378
>At5g67310.1 68418.m08488 cytochrome P450 family protein
Length = 507
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 199 HYPSPSCRVSGIDACQSSWQFCTSGAIFLEPFVF 300
H S C V+G D + +W F + AI +P V+
Sbjct: 382 HASSTDCEVAGFDIPRRTWLFINAWAIQRDPNVW 415
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 27.5 bits (58), Expect = 6.3
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = -2
Query: 415 SRARVRKNTEARRKGRHCGFGKRRGTANARMPQKEL 308
SR+R R + +R +GR + R + ++ P+K+L
Sbjct: 209 SRSRSRSRSRSRSRGRGRSHSRSRSLSRSKSPRKDL 244
>At3g28510.1 68416.m03561 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 530
Score = 27.5 bits (58), Expect = 6.3
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = -2
Query: 184 RVLMEYIHRKKAEKARTKMLSDQAEAXRNKVKEASQAPRGTYCRQEGGN 38
R L E +KKAEK KM + + K E + ++E GN
Sbjct: 465 RKLAEEEEKKKAEKEAKKMKKAEEAEEKKKKTEEDEKKEKVKAKEENGN 513
>At3g04340.1 68416.m00459 FtsH protease family protein similar to
chloroplast FtsH protease [Arabidopsis thaliana]
GI:1483215; contains Pfam profiles PF01434: Peptidase
family M41, PF00004: ATPase AAA family
Length = 960
Score = 27.5 bits (58), Expect = 6.3
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = -2
Query: 256 AKKIDRHLYHSLYMKAKGNVFKNKRVL 176
A K+++ +Y Y KAKG + KN+RVL
Sbjct: 870 AGKVEK-IYDLAYEKAKGMLLKNRRVL 895
>At2g32000.1 68415.m03910 DNA topoisomerase family protein similar
to DNA topoisomerase III beta-1 (EC 5.99.1.2)(SP:Q9Z321)
{Mus musculus}
Length = 865
Score = 27.5 bits (58), Expect = 6.3
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -2
Query: 451 DGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGT 338
D L++ H R+ VR+ R +GR G G RRG+
Sbjct: 816 DELLLSLVEVKHGRSFVRRGGRGRGRGRGRGRGGRRGS 853
>At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol
protease, putative similar to cysteine proteinase RD21A
precursor (thiol protease) GI:435619, SP:P43297 from
[Arabidopsis thaliana]
Length = 463
Score = 27.1 bits (57), Expect = 8.3
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 429 GFLMTRPSLIILRMFXLELVFAISLISXGSNH 524
GFL P +++L M + +S+IS NH
Sbjct: 2 GFLKLSPMILLLAMIGVSYAMDMSIISYDENH 33
>At5g05020.1 68418.m00533 expressed protein
Length = 154
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +3
Query: 60 YVPRGACDASFTLLRXASAWSLSIFVLAFSAF 155
YVP GA A+FTLLR + +I V F
Sbjct: 118 YVPDGALTATFTLLRIIQTNATNIAVFTAGPF 149
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,577,825
Number of Sequences: 28952
Number of extensions: 239538
Number of successful extensions: 718
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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