Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11j01f
(548 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41181| Best HMM Match : DUF164 (HMM E-Value=2.1) 40 0.001
SB_38786| Best HMM Match : HLH (HMM E-Value=1e-13) 39 0.003
SB_9150| Best HMM Match : PspA_IM30 (HMM E-Value=0.98) 39 0.003
SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.067
SB_36252| Best HMM Match : IQ (HMM E-Value=2.7e-35) 33 0.12
SB_4140| Best HMM Match : ANF_receptor (HMM E-Value=0.013) 33 0.15
SB_15354| Best HMM Match : NHL (HMM E-Value=4.4e-14) 32 0.27
SB_43576| Best HMM Match : EGF_CA (HMM E-Value=2.7e-38) 31 0.47
SB_54110| Best HMM Match : Hexapep (HMM E-Value=9.8e-14) 31 0.82
SB_49989| Best HMM Match : GRP (HMM E-Value=2.3) 29 1.9
SB_47412| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_36906| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_53055| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_32544| Best HMM Match : Extensin_2 (HMM E-Value=0.0062) 28 4.4
SB_30175| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_51287| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_32223| Best HMM Match : SH3BP5 (HMM E-Value=0.12) 28 5.8
SB_31933| Best HMM Match : PAN (HMM E-Value=3.5e-08) 28 5.8
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_41994| Best HMM Match : F-box (HMM E-Value=1.4e-06) 28 5.8
SB_20011| Best HMM Match : GED (HMM E-Value=0.65) 27 7.6
SB_1926| Best HMM Match : PH (HMM E-Value=1.4e-23) 27 7.6
SB_54236| Best HMM Match : bZIP_1 (HMM E-Value=1.1) 27 7.6
SB_41218| Best HMM Match : zf-C2H2 (HMM E-Value=0.68) 27 7.6
SB_30755| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
>SB_41181| Best HMM Match : DUF164 (HMM E-Value=2.1)
Length = 258
Score = 40.3 bits (90), Expect = 0.001
Identities = 25/104 (24%), Positives = 52/104 (50%), Gaps = 2/104 (1%)
Frame = +2
Query: 104 QIADIPIPKYESIDAGMYIIPDEVIQELALAGIELSENVDNVAIFDIEIPVDNVDFPVDS 283
++ D+P ++ + +P+E + ++ + I + E +++V + I I + D PVDS
Sbjct: 112 EMTDVPEGSI-NVQEAITDVPEEEVNDVPVDSINVQEEMNDVPVGSINIQEEMNDVPVDS 170
Query: 284 VNFVENV-EAPVENADFPADSVSF-VENLDAPVEDADVLADSVN 409
+N E + + PV + + + V ++ E DV DS+N
Sbjct: 171 INVQEEINDVPVGSINIQEEMNDVPVGGINIQEEVNDVPVDSIN 214
Score = 32.3 bits (70), Expect = 0.27
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +2
Query: 170 EVIQELALAGIELSENVDNVAIFDIEIPVDNVDFPVDSVNFVENVEAPVENADFPADSVS 349
E I ++ + I + E +++V + I I + D PVDS+N E E D P S++
Sbjct: 175 EEINDVPVGSINIQEEMNDVPVGGINIQEEVNDVPVDSINVQE------EMNDVPVGSIN 228
Query: 350 FVENL-DAP 373
E + D P
Sbjct: 229 IQEEMNDVP 237
>SB_38786| Best HMM Match : HLH (HMM E-Value=1e-13)
Length = 817
Score = 38.7 bits (86), Expect = 0.003
Identities = 39/162 (24%), Positives = 68/162 (41%), Gaps = 9/162 (5%)
Frame = +2
Query: 89 SIKPVQIADIPIPKYESIDAGM--YIIPDEVIQELALAGIELSE-NVDNVAIFDIEIP-- 253
++KPV I D+ + + D + IPD ++ + + + + ++ +V + ++IP
Sbjct: 469 TVKPVDIPDVTVKPVDIPDVTVKPVDIPDVTVKPVDIPDVTVKPVDIPDVTVKPVDIPDV 528
Query: 254 -VDNVDFPVDSVNFVENVEAPVENADFPADSVSFVENLDA---PVEDADVLADSVNFXXX 421
V VD P +V V+ + V+ D P +V V+ D PV+ DV V+
Sbjct: 529 TVKPVDIPDVTVKPVDIPDVTVKPVDIPDVTVKPVDIPDVTVKPVDIPDVTVKPVDIPDV 588
Query: 422 XXXXXXXXXXXXXXXXFVDNVDAPVEDADLQVAPVNIVDEPV 547
D PV+ D+ V PV+I D V
Sbjct: 589 TVKPVDIPDVTVKPVDIPDVTVKPVDIPDVTVKPVDIPDVTV 630
Score = 38.7 bits (86), Expect = 0.003
Identities = 39/162 (24%), Positives = 68/162 (41%), Gaps = 9/162 (5%)
Frame = +2
Query: 89 SIKPVQIADIPIPKYESIDAGM--YIIPDEVIQELALAGIELSE-NVDNVAIFDIEIP-- 253
++KPV I D+ + + D + IPD ++ + + + + ++ +V + ++IP
Sbjct: 529 TVKPVDIPDVTVKPVDIPDVTVKPVDIPDVTVKPVDIPDVTVKPVDIPDVTVKPVDIPDV 588
Query: 254 -VDNVDFPVDSVNFVENVEAPVENADFPADSVSFVENLDA---PVEDADVLADSVNFXXX 421
V VD P +V V+ + V+ D P +V V+ D PV+ DV V+
Sbjct: 589 TVKPVDIPDVTVKPVDIPDVTVKPVDIPDVTVKPVDIPDVTVKPVDIPDVTVKPVDIPDV 648
Query: 422 XXXXXXXXXXXXXXXXFVDNVDAPVEDADLQVAPVNIVDEPV 547
D PV+ D+ V PV+I D V
Sbjct: 649 TVKPVDIPDVTVKPVDIPDVTVKPVDIPDVTVKPVDIPDVTV 690
Score = 38.7 bits (86), Expect = 0.003
Identities = 39/162 (24%), Positives = 68/162 (41%), Gaps = 9/162 (5%)
Frame = +2
Query: 89 SIKPVQIADIPIPKYESIDAGM--YIIPDEVIQELALAGIELSE-NVDNVAIFDIEIP-- 253
++KPV I D+ + + D + IPD ++ + + + + ++ +V + ++IP
Sbjct: 589 TVKPVDIPDVTVKPVDIPDVTVKPVDIPDVTVKPVDIPDVTVKPVDIPDVTVKPVDIPDV 648
Query: 254 -VDNVDFPVDSVNFVENVEAPVENADFPADSVSFVENLDA---PVEDADVLADSVNFXXX 421
V VD P +V V+ + V+ D P +V V+ D PV+ DV V+
Sbjct: 649 TVKPVDIPDVTVKPVDIPDVTVKPVDIPDVTVKPVDIPDVTVKPVDIPDVTVKPVDIPDV 708
Query: 422 XXXXXXXXXXXXXXXXFVDNVDAPVEDADLQVAPVNIVDEPV 547
D PV+ D+ V PV+I D V
Sbjct: 709 TVKPVDIPDVTVKPVDIPDVTVKPVDIPDVTVKPVDIPDVTV 750
Score = 37.5 bits (83), Expect = 0.007
Identities = 38/156 (24%), Positives = 60/156 (38%), Gaps = 3/156 (1%)
Frame = +2
Query: 89 SIKPVQIADIPIPKYESIDAGM--YIIPDEVIQELALAGIELSENVDNVAIFDIEI-PVD 259
++KPV I D+ + + D + IPD ++ + + + V V I D+ + PVD
Sbjct: 649 TVKPVDIPDVTVKPVDIPDVTVKPVDIPDVTVKPVDIPDV----TVKPVDIPDVTVKPVD 704
Query: 260 NVDFPVDSVNFVENVEAPVENADFPADSVSFVENLDAPVEDADVLADSVNFXXXXXXXXX 439
D V V+ + PV+ D V + PV+ DV V+
Sbjct: 705 IPDVTVKPVDIPDVTVKPVDIPDVTVKPVDIPDVTVKPVDIPDVTVKPVDIPDVTVKPVD 764
Query: 440 XXXXXXXXXXFVDNVDAPVEDADLQVAPVNIVDEPV 547
D PV+ D+ V PV+I D V
Sbjct: 765 IPDVTVKPADIPDVTVKPVDIPDVTVKPVDIPDVTV 800
Score = 33.5 bits (73), Expect = 0.12
Identities = 25/107 (23%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
Frame = +2
Query: 89 SIKPVQIADIPIPKYESIDAGM--YIIPDEVIQELALAGIELSE-NVDNVAIFDIEIP-- 253
++KPV I D+ + + D + IPD ++ + + + + ++ +V + ++IP
Sbjct: 699 TVKPVDIPDVTVKPVDIPDVTVKPVDIPDVTVKPVDIPDVTVKPVDIPDVTVKPVDIPDV 758
Query: 254 -VDNVDFPVDSVNFVENVEAPVENADFPADSVSFVENLDAPVEDADV 391
V VD P +V + + V+ D P +V V+ D V+ D+
Sbjct: 759 TVKPVDIPDVTVKPADIPDVTVKPVDIPDVTVKPVDIPDVTVKPVDI 805
Score = 27.5 bits (58), Expect = 7.6
Identities = 27/104 (25%), Positives = 40/104 (38%), Gaps = 3/104 (2%)
Frame = +2
Query: 245 EIPVDNVDFPVDSVNFVENVEAPVENADFPADSVSFVENLDA---PVEDADVLADSVNFX 415
++ V VD P +V V+ + V+ D P +V V+ D PV+ DV V+
Sbjct: 467 DVTVKPVDIPDVTVKPVDIPDVTVKPVDIPDVTVKPVDIPDVTVKPVDIPDVTVKPVDIP 526
Query: 416 XXXXXXXXXXXXXXXXXXFVDNVDAPVEDADLQVAPVNIVDEPV 547
D PV+ D+ V PV+I D V
Sbjct: 527 DVTVKPVDIPDVTVKPVDIPDVTVKPVDIPDVTVKPVDIPDVTV 570
>SB_9150| Best HMM Match : PspA_IM30 (HMM E-Value=0.98)
Length = 242
Score = 38.7 bits (86), Expect = 0.003
Identities = 39/147 (26%), Positives = 58/147 (39%), Gaps = 8/147 (5%)
Frame = +2
Query: 101 VQIADIPIPKYES--IDA-GMYIIPDEVIQELALAGIELSENVDNV--AIFDIEIPVDNV 265
V+ A++PI K E+ +D G + +E A E E V + + E PV
Sbjct: 67 VEEAEVPIEKAETQPVDTEGPVENAETSFEEAEAADEETEEPVKEAEGSFEEAEAPVVET 126
Query: 266 DFPVDSVNF-VENVEAPVENADFPADSVSFVENLDAPVEDADVLADSVN--FXXXXXXXX 436
+ PV VE EAP+E A P S VE +AP E+ + + V
Sbjct: 127 EEPVKEAKASVEITEAPIEEAKAPERVESSVEEAEAPEEEVEAPVEEVEAPVEEAVASVE 186
Query: 437 XXXXXXXXXXXFVDNVDAPVEDADLQV 517
++ + PVEDA+ V
Sbjct: 187 EAEVPIEEAETQAEDTEGPVEDAEESV 213
Score = 31.5 bits (68), Expect = 0.47
Identities = 14/31 (45%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Frame = +2
Query: 296 ENVEAPVENADFPADSV-SFVENLDAPVEDA 385
+ VEAP+E A+ P + V + VE ++AP+E+A
Sbjct: 33 KKVEAPIEEAEAPEEEVEATVEEVEAPMEEA 63
>SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1438
Score = 34.3 bits (75), Expect = 0.067
Identities = 43/160 (26%), Positives = 70/160 (43%), Gaps = 11/160 (6%)
Frame = +2
Query: 101 VQIADIPIPKYES--IDAGMYIIPDEVIQELALAGIELSENVDNVAIFDIEIPVDNVDFP 274
V+ A++PI K E+ +D + E E A A E +E + + E + + P
Sbjct: 1034 VEEAEVPIEKAETQPVDTEGQVENAETSFEEAEAADEETEE----PVKEAEASFEEAEAP 1089
Query: 275 V-DSVNFVENVEAPVENADFPADSV--------SFVENLDAPVEDADVLADSVNFXXXXX 427
V ++ V+ EAPVE A+ PA+ + VE +AP+E+A+ + V
Sbjct: 1090 VVETEEPVKEAEAPVEEAEAPAEETEEPVKEAEASVEITEAPIEEAEAPDERVE-----S 1144
Query: 428 XXXXXXXXXXXXXXFVDNVDAPVEDADLQVAPVNIVDEPV 547
V+ V+APVE+A VA V + P+
Sbjct: 1145 SVEEAEAPEEEVKAPVEEVEAPVEEA---VASVEEAEVPI 1181
Score = 32.7 bits (71), Expect = 0.20
Identities = 31/157 (19%), Positives = 62/157 (39%), Gaps = 9/157 (5%)
Frame = +2
Query: 98 PVQIADIPIPKYESIDAGMYIIPDEVIQELALAGIELSENVDNVAIFDIEIPVDNVDFPV 277
PV+ A++P E+ G + +E A + E D V +E ++ + P
Sbjct: 805 PVEEAEVPEKGAEAPAEGSDVPTEEAEMATEEAVTSVEEAEDKVPAEKVEASIEEAEEPG 864
Query: 278 DSV-NFVENVEAP-------VENADFPAD-SVSFVENLDAPVEDADVLADSVNFXXXXXX 430
+ V + ++ EAP VE + P + + + VE P+E+A+ A+
Sbjct: 865 EEVESLLKEAEAPEEEVGDQVEEVEAPVEKAAASVEEAKVPMEEAETQAEDTE--GTSEE 922
Query: 431 XXXXXXXXXXXXXFVDNVDAPVEDADLQVAPVNIVDE 541
++ +A VE+ + V +++E
Sbjct: 923 ADASVEKAETLVVKMEQAEASVEETESPVEEAEVLEE 959
Score = 32.3 bits (70), Expect = 0.27
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 11/89 (12%)
Frame = +2
Query: 170 EVIQELALAGIELSENVDNVAIFDIEIPVDNVDFPVDSVNFVEN-VEAPVEN------AD 328
E E A A +E +E + V + E V+ + PV+ +E EAPVEN A+
Sbjct: 917 EGTSEEADASVEKAETLV-VKMEQAEASVEETESPVEEAEVLEEEAEAPVENEAAVEEAE 975
Query: 329 FPAD----SVSFVENLDAPVEDADVLADS 403
PA+ + + E +APVE+A+ L ++
Sbjct: 976 IPAEEHPQARTPAEETEAPVEEAEALGET 1004
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +2
Query: 245 EIPVDNVDFPVDSVNF-VENVEAPVENADFPADSVSFVENLDAPVEDAD 388
E P++ + P + V VE VEAP+E A + VE + P+E A+
Sbjct: 1003 ETPIEEAESPEEEVEATVEEVEAPIEEA------AASVEEAEVPIEKAE 1045
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +2
Query: 245 EIPVDNVDFPVDSVNF-VENVEAPVENADFPADSVSFVENLDAPVEDADVLAD 400
E PV+ + P + E E PVE ++ + V+ + PVE+A+V A+
Sbjct: 1206 EAPVEETEAPFEEDEAPAEKTEKPVEAGPSVQEAEAPVKETERPVEEAEVQAE 1258
Score = 27.5 bits (58), Expect = 7.6
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 9/109 (8%)
Frame = +2
Query: 89 SIKPVQIADIPIPKYESI--DAGMYIIPDEVIQELALAGIELSENVDNVAIFDIEIPVDN 262
++ V+ A++PI + E+ D + E + A A +E +E + E P +
Sbjct: 1170 AVASVEEAEVPIEEAETQAEDTEGPVEDAEASVQKAEAPVEETE----APFEEDEAPAEK 1225
Query: 263 VDFPVDSVNFVENVEA-------PVENADFPADSVSFVENLDAPVEDAD 388
+ PV++ V+ EA PVE A+ A+ APVE+A+
Sbjct: 1226 TEKPVEAGPSVQEAEAPVKETERPVEEAEVQAEEAESPAEKGAPVEEAE 1274
>SB_36252| Best HMM Match : IQ (HMM E-Value=2.7e-35)
Length = 442
Score = 33.5 bits (73), Expect = 0.12
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = +2
Query: 248 IPVDNVDFPVDSVNF-VENVEAPVENADFPA-DSVSFVENLDAPVEDADVLAD 400
+ D D P D+ + E+ + P E+AD PA D+ + + +APVE +D AD
Sbjct: 378 VAADAPDAPADTTDTPAEDADTPAEDADTPAEDADTATDAAEAPVEASDPPAD 430
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 305 EAPVENADFPA-DSVSFVENLDAPVEDADVLADS 403
+AP + D PA D+ + E+ D P EDAD D+
Sbjct: 384 DAPADTTDTPAEDADTPAEDADTPAEDADTATDA 417
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 239 DIEIPVDNVDFPV-DSVNFVENVEAPVENADFPADSVS 349
D + P ++ D P D+ + EAPVE +D PAD S
Sbjct: 396 DADTPAEDADTPAEDADTATDAAEAPVEASDPPADDES 433
>SB_4140| Best HMM Match : ANF_receptor (HMM E-Value=0.013)
Length = 472
Score = 33.1 bits (72), Expect = 0.15
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = +2
Query: 134 ESIDAGMYIIPDEVIQELALAGIELSENVDNVAIFDIEIPVDNVDFPVDSVN-FVENVEA 310
ES+D + ++ D V ++ + + DNVA+ D DNV VD V V+NV
Sbjct: 399 ESVDDNVAVVVDIVDDDVDSVSVVVESVDDNVAVVD-----DNVSVVVDGVAVVVDNVAV 453
Query: 311 PVENADFPADSVSFVEN 361
VE+ D A V V++
Sbjct: 454 VVESVDDVAVVVESVDD 470
Score = 30.7 bits (66), Expect = 0.82
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 7/87 (8%)
Frame = +2
Query: 167 DEVIQELALAGIELSENVDNVAIF--DIEIPVDNVDFPVDSVNFVENVEAPVENADFPAD 340
D+ + +A+ ++ VDNVA+ ++ V NV V+SV+ +NV V+ D D
Sbjct: 360 DDDVVNVAVVVESVAVAVDNVAVVVDSVDDDVVNVAVVVESVD--DNVAVVVDIVDDDVD 417
Query: 341 SVS-FVENLD---APVED-ADVLADSV 406
SVS VE++D A V+D V+ D V
Sbjct: 418 SVSVVVESVDDNVAVVDDNVSVVVDGV 444
>SB_15354| Best HMM Match : NHL (HMM E-Value=4.4e-14)
Length = 1071
Score = 32.3 bits (70), Expect = 0.27
Identities = 25/86 (29%), Positives = 37/86 (43%)
Frame = -1
Query: 530 CSQGRLVNRRPQLEHRRCLRS*QNQPGHRRPQLEHRRCLRSLQNQPGHRRPQLEHRGFLR 351
C R N+R ++H CL + Q G + +EH C + Q G + ++H
Sbjct: 524 CQSSRY-NKRA-MDHTLCLLNSQQSTGCDQDSIEHTPCSLNSQQSTGCGKDTIDHTPC-- 579
Query: 350 SLQSQPGNRHSQLELRHFLRSLQNQQ 273
SL SQ Q + H SL +QQ
Sbjct: 580 SLNSQQSTGCDQGTIDHTPCSLNSQQ 605
>SB_43576| Best HMM Match : EGF_CA (HMM E-Value=2.7e-38)
Length = 641
Score = 31.5 bits (68), Expect = 0.47
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = -1
Query: 461 NQPGHRRPQLEHRRCLRSLQNQ--PGHRRPQLEHRGFLRSLQSQPGNRHSQLELRHFLRS 288
NQ H++ Q +H R + QNQ H++ Q +H + Q+Q +RH + + +H R
Sbjct: 568 NQHHHQKQQNQHHRHHQKQQNQHHRHHQKKQNQHYRHHQKQQNQHHHRHRKQQNQHHHRH 627
Query: 287 LQN 279
N
Sbjct: 628 GHN 630
Score = 28.7 bits (61), Expect = 3.3
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = -1
Query: 491 EHRRCLRS*QNQPGHRRPQLEHRRCLRSLQNQ--PGHRRPQLEHRGFLRSLQSQPGNRH 321
+H + Q+ H++ Q +H R + QNQ H++ Q +H R Q+Q +RH
Sbjct: 569 QHHHQKQQNQHHRHHQKQQNQHHRHHQKKQNQHYRHHQKQQNQHHHRHRKQQNQHHHRH 627
>SB_54110| Best HMM Match : Hexapep (HMM E-Value=9.8e-14)
Length = 729
Score = 30.7 bits (66), Expect = 0.82
Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 4/111 (3%)
Frame = +2
Query: 218 VDNVAIFDIEIPVDNVDFPVDSVNFVENVEAPVENADFPADSVSFVENL----DAPVEDA 385
+D+V + D +D+VD VD +++V+ V + D D V V+ + D V D
Sbjct: 54 LDDVDVVDGVTLLDDVDV-VDGATLLDDVD--VVDGDPMLDDVDVVDGVTLLDDVDVVDG 110
Query: 386 DVLADSVNFXXXXXXXXXXXXXXXXXXXFVDNVDAPVEDADLQVAPVNIVD 538
D L D V+ +D+VD VED D + V++VD
Sbjct: 111 DPLLDDVDVVDGVTLLDDVDVVDGAT--LLDDVD--VEDGDAMLDDVDVVD 157
>SB_49989| Best HMM Match : GRP (HMM E-Value=2.3)
Length = 181
Score = 29.5 bits (63), Expect = 1.9
Identities = 21/108 (19%), Positives = 51/108 (47%)
Frame = -1
Query: 533 RCSQGRLVNRRPQLEHRRCLRS*QNQPGHRRPQLEHRRCLRSLQNQPGHRRPQLEHRGFL 354
+ Q V+ + + HR ++ Q+ G + + HR ++ Q+ G + + HRG
Sbjct: 49 QAKQHHRVSGQAKQHHRESGQAKQHHRGSGQAKQHHRGSGQAKQHHRGSGQAKQHHRGSG 108
Query: 353 RSLQSQPGNRHSQLELRHFLRSLQNQQGNRRCQREFQCQKSQRCLHFR 210
++ Q G+ ++ R ++ Q+ +G+ + ++ + + Q H+R
Sbjct: 109 QAKQHHRGSGQAKQHHRGSGQAKQHHRGSGQAKQHHR-ESGQAKQHYR 155
>SB_47412| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 29.5 bits (63), Expect = 1.9
Identities = 23/54 (42%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = -1
Query: 518 RLVNRRPQLEHRRCLRS*QNQPG-H-RRPQLEHRRCLRSLQNQPGHRRPQLEHR 363
RL RRP+L HRR R +P H RRP+L RR + HRR HR
Sbjct: 163 RLHTRRPRL-HRRRTRLHTRRPRLHTRRPRLHRRRPRLHTRRPRRHRRRPRLHR 215
>SB_36906| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 537
Score = 29.1 bits (62), Expect = 2.5
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = -1
Query: 329 NRHSQLELRHFLRSLQNQQGNRRCQREFQCQKSQRCLHFRSIQSRPRRVL 180
NR + +LR L+S +++ R C+ Q + H R+I RP V+
Sbjct: 355 NRTFKEDLRAILQSEAHKELKRWCESTSQASYTMNITHHRAINERPYEVV 404
>SB_53055| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 65
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +2
Query: 236 FDIEIPVDNVD--FPVDSVNFVENVEAPVENADFP 334
+DI + D + P D + F+ENV P E +DFP
Sbjct: 8 YDIGLVFDKIARYSPQDKLKFIENVWKPGELSDFP 42
>SB_32544| Best HMM Match : Extensin_2 (HMM E-Value=0.0062)
Length = 282
Score = 28.3 bits (60), Expect = 4.4
Identities = 20/69 (28%), Positives = 31/69 (44%)
Frame = +3
Query: 312 QLRMPISRLTL*AS*KTSMLQLRTPMSWLILXXXXXXXMLQLRTPMSRLILSAS*TTSML 491
Q+R P+ + S L++RTP LQ+R+P + S L
Sbjct: 160 QVRSPLFKSAAFLSSPQPSLRVRTPPFKSAPLFSSPQPSLQVRSPPFKSAAFPSSPQPSL 219
Query: 492 QLRTPIYKS 518
Q+RTP++KS
Sbjct: 220 QVRTPLFKS 228
>SB_30175| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 617
Score = 28.3 bits (60), Expect = 4.4
Identities = 24/106 (22%), Positives = 49/106 (46%), Gaps = 5/106 (4%)
Frame = -1
Query: 518 RLVNRRPQLEHRRCLRS*QNQPGHRRPQLEHRRCLRSLQNQPGHRR-----PQLEHRGFL 354
+L+ ++ +L+ R L+ Q + ++ L+ + L+ Q + HR+ +L+HR L
Sbjct: 354 KLIQQQEELKQRELLK--QQEVKKQQKLLKQQERLKQ-QEEIRHRQLLKEQEELKHRKLL 410
Query: 353 RSLQSQPGNRHSQLELRHFLRSLQNQQGNRRCQREFQCQKSQRCLH 216
+ Q + + +L+H + + QQ Q E Q + Q H
Sbjct: 411 QEQQKLQHKKLQEEKLKHQKQEEEQQQLQHHKQEEEQLKHQQEQQH 456
>SB_51287| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 276
Score = 27.9 bits (59), Expect = 5.8
Identities = 29/70 (41%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = -1
Query: 458 QPGHRRPQLEHRRCLRSLQN-QPGHRRPQLEHRGFLRSLQS-QPGNRHSQLELRHFLRSL 285
QPG R E R LR L QPGH RP + LR L + QPG R E + LR L
Sbjct: 75 QPGLRPLDTEQPR-LRPLDTEQPGH-RPLDTEQPRLRPLDTEQPGLRPQDTE-QPGLRPL 131
Query: 284 QNQQGNRRCQ 255
+Q R Q
Sbjct: 132 DTEQPRLRPQ 141
Score = 27.5 bits (58), Expect = 7.6
Identities = 21/62 (33%), Positives = 27/62 (43%)
Frame = -1
Query: 458 QPGHRRPQLEHRRCLRSLQNQPGHRRPQLEHRGFLRSLQSQPGNRHSQLELRHFLRSLQN 279
QPGHR E R LR L + RPQ + LR L ++ Q + LR L
Sbjct: 95 QPGHRPLDTEQPR-LRPLDTEQPGLRPQDTEQPGLRPLDTEQPRLRPQDTEQPGLRPLDT 153
Query: 278 QQ 273
+Q
Sbjct: 154 EQ 155
>SB_32223| Best HMM Match : SH3BP5 (HMM E-Value=0.12)
Length = 709
Score = 27.9 bits (59), Expect = 5.8
Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
Frame = -1
Query: 521 GRLVNRRPQLEHRRCL-RS*QNQPGHRRPQLEHRRCLRSLQNQPGHRRPQLEHRGFLRSL 345
GRL +R +LE +S Q H +L H+ R +QP P+ + L
Sbjct: 360 GRLKSRCSELESSYMQSQSLLEQQSHEIFELRHQIAGRQDPHQPSVPSPRTSDGSEVLEL 419
Query: 344 QSQPGNRH-SQLELRHFLRSLQNQQGNRRCQRE 249
++Q N H SQ L L+ Q N + R+
Sbjct: 420 RNQVNNLHISQRSLEQLLQEKQVHVQNLKTLRD 452
>SB_31933| Best HMM Match : PAN (HMM E-Value=3.5e-08)
Length = 231
Score = 27.9 bits (59), Expect = 5.8
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 7/46 (15%)
Frame = -1
Query: 296 LRSLQNQQGNRRCQREFQCQ------KSQRC-LHFRSIQSRPRRVL 180
LR QG +RC++E QCQ + C L R+IQ +P L
Sbjct: 27 LRDTDIHQGFQRCKKEVQCQSLNYYIRDNTCHLSNRTIQQKPANAL 72
>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4529
Score = 27.9 bits (59), Expect = 5.8
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +3
Query: 57 SSHSLERRPPHQSNPSKSRISQYRNTKASTLECTSSPTKSFKNSPWP 197
SS L PPH N + ++ + A T T+ P S K P P
Sbjct: 627 SSSGLPDSPPHSDNMQEEKLFVSASYCAPTRYTTTPPKNSGKRKPGP 673
>SB_41994| Best HMM Match : F-box (HMM E-Value=1.4e-06)
Length = 1020
Score = 27.9 bits (59), Expect = 5.8
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -1
Query: 371 EHRGFLRSLQSQPGNRHSQLELRHFLRSLQNQQG 270
EH LR L + +R S E+ HFLRS +N +G
Sbjct: 679 EHLRSLRMLDMR-NSRGSMDEIEHFLRSAENLEG 711
>SB_20011| Best HMM Match : GED (HMM E-Value=0.65)
Length = 427
Score = 27.5 bits (58), Expect = 7.6
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +2
Query: 236 FDIEIPVDNVDF--PVDSVNFVENVEAPVENADFP 334
+DI + D + P D + F+ENV P E DFP
Sbjct: 15 YDIGLVFDKIASYSPQDKLKFIENVWKPGELLDFP 49
>SB_1926| Best HMM Match : PH (HMM E-Value=1.4e-23)
Length = 998
Score = 27.5 bits (58), Expect = 7.6
Identities = 18/53 (33%), Positives = 23/53 (43%)
Frame = -1
Query: 476 LRS*QNQPGHRRPQLEHRRCLRSLQNQPGHRRPQLEHRGFLRSLQSQPGNRHS 318
+RS PG R + +R +Q GH R GF RS Q PG+ S
Sbjct: 158 IRSYPVTPGCTRSYQGSEKSVRGVQVISGHARSYPVTPGFTRSYQVIPGHTRS 210
>SB_54236| Best HMM Match : bZIP_1 (HMM E-Value=1.1)
Length = 1188
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/38 (34%), Positives = 25/38 (65%)
Frame = +2
Query: 197 GIELSENVDNVAIFDIEIPVDNVDFPVDSVNFVENVEA 310
G EL E +D +++ +EI +D++D P S+ ++ V+A
Sbjct: 965 GREL-ERIDEISVDGVEIELDDIDIPYPSMR-MDGVDA 1000
>SB_41218| Best HMM Match : zf-C2H2 (HMM E-Value=0.68)
Length = 807
Score = 27.5 bits (58), Expect = 7.6
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = +2
Query: 245 EIPVDNVDFPVDSVNFVENVEAPVENADFPADSVSFVENLDAPVEDADVL 394
E V N P DSV+ VEN A +N D + VE + A D L
Sbjct: 601 ESGVPNSQVPSDSVHPVENTSAISQNLDASQEQSVTVEGMSAVSSALDQL 650
>SB_30755| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 906
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 81 PPHQSNPSKSRISQYRNTKASTLECTSSPTKSFKNSP 191
PP NP+K + +ST+ + SPT NSP
Sbjct: 463 PPVSPNPAKPSNILFEGPSSSTVFKSLSPTDQMSNSP 499
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,798,908
Number of Sequences: 59808
Number of extensions: 339073
Number of successful extensions: 1345
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1256
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -