Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11j01f
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016427-8|AAB65355.1|  513|Caenorhabditis elegans Hypothetical ...    32   0.24 
U80845-1|AAK39181.1| 1217|Caenorhabditis elegans Prion-like-(q/n...    29   1.7  
AF024496-1|AAB70339.1|  542|Caenorhabditis elegans Hypothetical ...    29   2.2  
AC006790-1|AAY55890.1|  309|Caenorhabditis elegans Hypothetical ...    28   3.9  
AL132877-9|CAC70109.2|  529|Caenorhabditis elegans Hypothetical ...    28   5.1  
AL032626-1|CAA21538.1|  183|Caenorhabditis elegans Hypothetical ...    28   5.1  
U41547-5|AAX88831.1|  272|Caenorhabditis elegans C.elegans homeo...    27   8.9  
U29614-9|AAA68807.1|  232|Caenorhabditis elegans Hypothetical pr...    27   8.9  
AF106573-3|AAF02106.1|  198|Caenorhabditis elegans Hypothetical ...    27   8.9  

>AF016427-8|AAB65355.1|  513|Caenorhabditis elegans Hypothetical
           protein F32D1.9 protein.
          Length = 513

 Score = 32.3 bits (70), Expect = 0.24
 Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
 Frame = +2

Query: 179 QELALAGIELSENVDNVAIFDIEIPVDNVDFPVDSVNFVENVEAPVENADFPADSV---- 346
           +E A+A +E SEN D + + D  IP ++V    ++   +EN+E  +++++  A++     
Sbjct: 17  EEHAVAPVEDSENPDVIQLDDDVIPEEDVPDDEETAENLENLENVLDDSEIIAENSGEAD 76

Query: 347 SFVENLDAPVEDAD 388
             VE  D P  D D
Sbjct: 77  QEVEEEDNPFADDD 90


>U80845-1|AAK39181.1| 1217|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 15
           protein.
          Length = 1217

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
 Frame = -1

Query: 500 PQLEHRRCLRS*QNQPGHRRPQLEHRRCLRSLQNQPGHRRPQLEHRGFLRSLQSQPGNRH 321
           PQ+   R  +    QP    PQ +H+R   ++  Q     PQ + R  +   Q+Q   R 
Sbjct: 524 PQMSQMRMQQQQPQQPNMNSPQSQHQRAPNNMNMQQNLPNPQQQMR--IPQAQNQMQQRI 581

Query: 320 SQLELRHF-LRSLQNQQG 270
            Q+  +   ++  QN  G
Sbjct: 582 PQVSPQQMQMQQQQNMNG 599


>AF024496-1|AAB70339.1|  542|Caenorhabditis elegans Hypothetical
           protein ZC178.1 protein.
          Length = 542

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 32/118 (27%), Positives = 51/118 (43%)
 Frame = -2

Query: 508 IGVLNWSIDVVYEADRISRDIGVLNWSIDVVYEVYRISQDIGVLNWSIEVFYEAYRVSRE 329
           IGV+   +D V     +   IGVL   +D V  V  +   IGV+   ++       V   
Sbjct: 427 IGVVLEELDSVELVMSVEYTIGVLLEELDSVELVMSVEDTIGVVLEELDSVELVMSVEYT 486

Query: 328 IGILNWSFDIFYEVYRINREIDVVNGNFNVKNRNVVYIFAQFNPGQGEFLNDFVGDDV 155
           IG+L    D    V  +   I VV G    +N +VV    +  P    F+++ +G++V
Sbjct: 487 IGVLLEELDSVELVMPVVDTIGVVTG-LGTENCDVVENSFEVLPDLWFFMSN-MGENV 542



 Score = 27.9 bits (59), Expect = 5.1
 Identities = 23/89 (25%), Positives = 35/89 (39%)
 Frame = -2

Query: 508 IGVLNWSIDVVYEADRISRDIGVLNWSIDVVYEVYRISQDIGVLNWSIEVFYEAYRVSRE 329
           IGV+   +D V     +   IGV+   +D V  V  +   IGV+   ++       V   
Sbjct: 187 IGVVLEELDSVELVRSVEDTIGVVLEELDSVELVMSVEDTIGVVREKLDSVELVMSVEDT 246

Query: 328 IGILNWSFDIFYEVYRINREIDVVNGNFN 242
           IG++    D    V  +   I VV    N
Sbjct: 247 IGVVREKLDSVELVMSVEDTIGVVLEELN 275


>AC006790-1|AAY55890.1|  309|Caenorhabditis elegans Hypothetical
           protein Y49F6B.13 protein.
          Length = 309

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -2

Query: 292 EVYRINREIDVVNGNFNVKNRNVVYIFAQFNPG--QGEFLN 176
           +V+R+ + I   NGN N+    ++     F+PG  +G F+N
Sbjct: 212 DVFRVLKFISPQNGNSNIDASKLIQQLTGFSPGFREGHFVN 252


>AL132877-9|CAC70109.2|  529|Caenorhabditis elegans Hypothetical
           protein Y105E8B.3 protein.
          Length = 529

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 18/46 (39%), Positives = 22/46 (47%)
 Frame = +2

Query: 239 DIEIPVDNVDFPVDSVNFVENVEAPVENADFPADSVSFVENLDAPV 376
           DIE+P ++   P DS N  EN E   E  +  AD    VE   A V
Sbjct: 415 DIELPPEDFKRPADSENDDENDEDEEEGEEEDADGHVAVEEQVAKV 460


>AL032626-1|CAA21538.1|  183|Caenorhabditis elegans Hypothetical
           protein Y37D8A.1 protein.
          Length = 183

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
 Frame = -1

Query: 479 CLRS*QNQPGHRRPQLE-HRRCLRSLQNQPGHRRPQLEHRGF-LRSLQSQPGNRHSQLEL 306
           CLR  Q  P     Q + H   L  L   PG         GF L S+   P ++  + E+
Sbjct: 80  CLRKLQKSPNKIAGQKDLHALALSHLLPIPGEN-------GFPLNSMYKAPQSKPDEDEM 132

Query: 305 RHFLRSLQNQQGNRRCQREF 246
           R +L+ ++ + G R C   F
Sbjct: 133 RAYLQQIRQEIGARLCDLAF 152


>U41547-5|AAX88831.1|  272|Caenorhabditis elegans C.elegans homeobox
           protein 60 protein.
          Length = 272

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = -3

Query: 246 SMSKIATLSTFSLNSIPAKASS*MTSSGMMYIPASMLSYFGIGISAIWTGLI 91
           SM+  A     SLNS    +SS M++SG++ IP    +   + I A+  GL+
Sbjct: 214 SMANEAQAIQNSLNSSTVASSSNMSTSGLINIPLVNPTMQSMVIPAVQPGLL 265


>U29614-9|AAA68807.1|  232|Caenorhabditis elegans Hypothetical
           protein F18E9.1 protein.
          Length = 232

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = +2

Query: 203 ELSENVDNVAIF--DIEIPVDNVDFPVDSVNFV-ENVEAPVENADFPADSVSFV 355
           E+ E+V++  I   DIE PV N D PVD  +   E     V +A   A S S V
Sbjct: 123 EIEEHVEDPVINNRDIEEPVQNGDVPVDKTDISHEPANQAVADASQGASSESKV 176


>AF106573-3|AAF02106.1|  198|Caenorhabditis elegans Hypothetical
           protein F52D2.10 protein.
          Length = 198

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +2

Query: 167 DEVIQELALAGIELSENVDNVAIFDIEIPVDNVDFPVD 280
           D+V  EL    +E+  N D+  +F+    +DN+++ +D
Sbjct: 61  DKVSMELEETDLEMLLNTDSKVVFNNHSRLDNIEYFID 98


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,620,316
Number of Sequences: 27780
Number of extensions: 248317
Number of successful extensions: 1016
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)