Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11i24r
(742 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.) 253 1e-67
SB_27487| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_502| Best HMM Match : DNA_pol3_alpha (HMM E-Value=0) 29 3.0
SB_25372| Best HMM Match : DoxX (HMM E-Value=0.96) 29 4.0
SB_44418| Best HMM Match : TP2 (HMM E-Value=4.3) 29 4.0
SB_45305| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_33814| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_38123| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
>SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1109
Score = 253 bits (619), Expect = 1e-67
Identities = 124/179 (69%), Positives = 141/179 (78%), Gaps = 1/179 (0%)
Frame = -3
Query: 740 LAPLAKVIHDNFEIGEGLMXXXXXXXXXXXXVDGPSGKLWRDGRGAQQNIIPASTGAAKA 561
LAPL KVI+DNF + EGLM VDGPS K WRDGRGA QN+IPASTGAAKA
Sbjct: 930 LAPLVKVINDNFGLEEGLMTTIHAYTATQKTVDGPSAKNWRDGRGAHQNVIPASTGAAKA 989
Query: 560 VGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKPASYEAIKQKVKEAAEGPLKG-ILG 384
VGKVIP +NGKLTGMAFRVPVA+VSVVDLT RL KPA YE IK VK+A+E G LG
Sbjct: 990 VGKVIPEVNGKLTGMAFRVPVADVSVVDLTCRLKKPAKYEEIKAVVKKASESKEMGQYLG 1049
Query: 383 YTEDQVVSSDFIGDSHSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRVIDLIKYIQSK 207
YTEDQVVS+DFIG+ SS+FDA AGI LND FVKL++WYDNEYGYS RV+DL++Y+ S+
Sbjct: 1050 YTEDQVVSTDFIGERVSSVFDARAGIQLNDKFVKLVTWYDNEYGYSHRVVDLMRYMASR 1108
>SB_27487| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 555
Score = 29.9 bits (64), Expect = 2.3
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Frame = -1
Query: 730 LQRLFMITL-KLVRA**LLFMPQLLHRKLLMDLLENY-GVMAVVLNKTSFLPLLVLPKLW 557
L+R ++ + KL+R L+ M +LL R LL+ + + G + V++NK LLVL
Sbjct: 162 LRRALLVLMNKLLRGALLVLMNKLLRRALLVLMNKLLRGALLVLMNKLLRRALLVLMNKL 221
Query: 556 VRLSLLLM 533
+R +LL++
Sbjct: 222 LRRALLVL 229
>SB_502| Best HMM Match : DNA_pol3_alpha (HMM E-Value=0)
Length = 428
Score = 29.5 bits (63), Expect = 3.0
Identities = 20/69 (28%), Positives = 35/69 (50%)
Frame = -3
Query: 614 GRGAQQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKPASYEAI 435
GR A II T AAKAV + + + GK G+A + ++ + ++ + L K E
Sbjct: 139 GRDAVSQIITFGTMAAKAVVRDVARVQGKAFGLADK--LSKLIPFEVGITLSKAMEQEPA 196
Query: 434 KQKVKEAAE 408
++ E++E
Sbjct: 197 LREFVESSE 205
>SB_25372| Best HMM Match : DoxX (HMM E-Value=0.96)
Length = 244
Score = 29.1 bits (62), Expect = 4.0
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = -3
Query: 506 VPVANVSVVDLTVRLGKPASYEAIKQKVKEAAEGPLKGILGYTEDQV 366
V A V+VV + S++A K VK+ E PL L YT DQ+
Sbjct: 147 VAAAAVAVVVCVGSVCSTISFQAYKTWVKQHGEEPLLPGLNYTNDQL 193
>SB_44418| Best HMM Match : TP2 (HMM E-Value=4.3)
Length = 148
Score = 29.1 bits (62), Expect = 4.0
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Frame = +3
Query: 528 LAIKSRDNLTHSFGSTSRGRNDVL-LSTTAITP*FSRRS---INSFLCSSCGMNSSHQAL 695
LA K+ N HSF + R + +ST +T F R +N+ LC C H+AL
Sbjct: 27 LATKAAKN--HSFKKIYKIRRSFIDVSTLGLTSGFESRGSRYVNARLCKLCWQQRGHRAL 84
Query: 696 TNFKVIMNNL 725
K I L
Sbjct: 85 FRGKAIQGLL 94
>SB_45305| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 593
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -3
Query: 605 AQQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPVANVS 486
AQ N I G +G I +NG + GMA +AN+S
Sbjct: 374 AQMNGIAGMNGIGNGMGNGIGIMNGNMNGMAGISALANLS 413
>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2834
Score = 28.7 bits (61), Expect = 5.2
Identities = 31/97 (31%), Positives = 42/97 (43%)
Frame = +1
Query: 295 SFKEIPAAASKIEECESPMKSEDTT*SSVYPRMPFKGPSAASLTFCLMAS*LAGFPRRTV 474
S + P+AAS + S S T SV P GPSAAS + + P+ TV
Sbjct: 1939 STQAAPSAASSTQVAPSMAPSTQTG-HSVTPSTQ-AGPSAASCSQVAQSIVATAPPKPTV 1996
Query: 475 RSTTDTLATGTRNAIPVSLPLRAGITLPTALAAPVEA 585
STT + T P + I+L A ++PV A
Sbjct: 1997 ASTTYQAPSTTTTTHPSQ---QTTISLVQAQSSPVAA 2030
>SB_33814| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 282
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -3
Query: 605 AQQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPVANVS 486
AQ N I G +G I +NG + GMA +AN+S
Sbjct: 63 AQMNGIAGMNGIGNGMGNGIGIMNGNMNGMAGISALANLS 102
>SB_38123| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 853
Score = 27.9 bits (59), Expect = 9.1
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = +1
Query: 385 PRMPFKGPSAASLTFCLMAS*LAGFPRRTVR--STTDTLATGTRNAIPVSLPLRAGITLP 558
P+ P + P+ AS+T A T STT T +T T NAI V P ++
Sbjct: 373 PKPPIELPTPASITSSQTAHNTTTLIDTTTSPTSTTSTASTTTANAIRVEEPPKSSFLQE 432
Query: 559 TA 564
TA
Sbjct: 433 TA 434
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,143,043
Number of Sequences: 59808
Number of extensions: 397158
Number of successful extensions: 903
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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