Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11i24f
         (630 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)             214   6e-56
SB_4347| Best HMM Match : CXCXC (HMM E-Value=7.9)                      33   0.19 
SB_10790| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.44 
SB_15451| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.7)            31   1.0  
SB_20220| Best HMM Match : E-MAP-115 (HMM E-Value=2.1)                 29   4.1  
SB_12042| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_16757| Best HMM Match : S-antigen (HMM E-Value=0.56)                28   5.4  
SB_28980| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_28746| Best HMM Match : UPF0193 (HMM E-Value=0.31)                  27   9.5  

>SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1109

 Score =  214 bits (522), Expect = 6e-56
 Identities = 97/131 (74%), Positives = 113/131 (86%)
 Frame = +1

Query: 208  VYLFKYDSTHGRFKGSVEVQDGFLVVNGNKIAVFSERDPKAIPWGKAGAEYVVESTGVFT 387
            VY+FKYDSTHGRFKG+VE +DG LV+NG  ++VF+ +DP  IPWG+ GA+YVVESTGVFT
Sbjct: 817  VYMFKYDSTHGRFKGTVEAKDGKLVINGKPVSVFACKDPTQIPWGETGADYVVESTGVFT 876

Query: 388  TTDKASAHLEGGAKKVIISAPSADAPMFVVGVNLEAYDPSFKVISNASCTTNCLAPLAKV 567
            T +KA  HL+GGAKKVIISAPSADAPMFV+GVN E YDPS  V+SNASCTTNCLAPL KV
Sbjct: 877  TLEKAGFHLKGGAKKVIISAPSADAPMFVMGVNHEKYDPSMTVVSNASCTTNCLAPLVKV 936

Query: 568  IHDNFEIVEGL 600
            I+DNF + EGL
Sbjct: 937  INDNFGLEEGL 947


>SB_4347| Best HMM Match : CXCXC (HMM E-Value=7.9)
          Length = 295

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 45/150 (30%), Positives = 67/150 (44%)
 Frame = +2

Query: 140 VLLLKRELKWSL*MTLSSVLTIWFIFSSMIPPMAVLRAVLRFRMDSLLLTVTKLPFSQKG 319
           +LLLK  L   L +TL+ +L +       +    +L+  L     +LLL +T  P   K 
Sbjct: 34  ILLLKLTLTPLLKLTLTLLLKLTLTLLLKLALTLLLKLTL-----TLLLKLTLAPLL-KL 87

Query: 320 TLRPFHGEKLGLNML*SLLVSLPLQIKHLLTWREVLKKLLYQLPVLMPPCLLWVLT*KLM 499
           TL P    KL L  L  L ++L L++   L  +  L  LL      +    L +L    +
Sbjct: 88  TLTPLL--KLTLTPLLKLTLTLLLKLALTLLLKLTLTPLLKLTLTPLLKLTLTLLLKLTL 145

Query: 500 TPLLRSSQMLLAPQTVLPHLQRLFMITLKL 589
           TPLL+ +  LL   T+ P L+      LKL
Sbjct: 146 TPLLKLTLTLLLKLTLAPLLKLTLTPLLKL 175


>SB_10790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 368

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 21/57 (36%), Positives = 31/57 (54%)
 Frame = +2

Query: 2   LSDFKTPSCTERTWWWSVIQQIFYNLPITCQKLESMDLAALAVWCSVLLLKRELKWS 172
           +SD    SCT      S+ + +FY   I+C+KL S+D+ AL  + S  LL   +K S
Sbjct: 13  ISDHFMVSCT-----LSLPKTVFYCKEISCRKLRSIDMTALRDYISSSLLHGTMKTS 64


>SB_15451| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.7)
          Length = 277

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +2

Query: 446 LPVLMPPCLLWVLT*KLMTPLLRSSQMLL 532
           +PV+MP CL  +   K+M PLL  +++LL
Sbjct: 194 IPVIMPHCLAAMSCGKVMAPLLAKAELLL 222


>SB_20220| Best HMM Match : E-MAP-115 (HMM E-Value=2.1)
          Length = 405

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -2

Query: 443 DIITFLAPPSK*ADALSVVVKTPVDSTTYSAPAFPHGMALGSLSE 309
           D+I  +A P + A A S    T V S +Y+  AFP G    S S+
Sbjct: 175 DVIERMAAPPRDAPATSTPCPTRVLSPSYALAAFPTGENASSSSQ 219


>SB_12042| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 142

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 23/82 (28%), Positives = 35/82 (42%)
 Frame = -1

Query: 372 RLYNIFSPSFSPWNGLRVPF*ENGNFVTVNNKESILNLNTALKTAMGGIILEKINHIVKT 193
           R  N+    F  W GLRV   +  N   V     I N  T L      +I E +   VK 
Sbjct: 6   RAANVTKIPFDGWVGLRVKLKDAANNHEVLVPFLIANQTTDLPIIGFNVIEEIVKGYVKD 65

Query: 192 DERVIYSDHLSSLFNRSTEHQT 127
           ++  + S   SSL++  +++ T
Sbjct: 66  EDNELNSALASSLYDVESDNVT 87


>SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 834

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 3/117 (2%)
 Frame = +2

Query: 236 MAVLRAVLRFRMDSLLLTVTKLP-FSQKGTLRPFHGEKLGLNML*SLLVSLPLQIKHLLT 412
           +A L+ V+  ++ + L  +T L   +    L P       L +L  L V +PLQ+   LT
Sbjct: 380 LAPLQVVITLQVLTSLQVLTSLQVLTSLQVLTPLQ-VPTPLQVLIPLQVLIPLQV---LT 435

Query: 413 WREVLKKLLYQLP--VLMPPCLLWVLT*KLMTPLLRSSQMLLAPQTVLPHLQRLFMI 577
             +VL  L   LP  VL+P  +L  L   +   +L   Q+L  PQ + P LQ L ++
Sbjct: 436 PLQVLIPLQVLLPLQVLIPLQVLTPLQVLITLQVLTPPQVLTPPQVLAP-LQVLILL 491


>SB_16757| Best HMM Match : S-antigen (HMM E-Value=0.56)
          Length = 1566

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 42/163 (25%), Positives = 66/163 (40%), Gaps = 3/163 (1%)
 Frame = +2

Query: 143  LLLKRELKWSL*MTLSSVLTIWFIFSSMIPPMAVLRAVLRFR--MDSLLLTVTKLPFSQK 316
            L+L+      L +T SS LT   +     P   +L +V+ F   +  L  +VT+LP S K
Sbjct: 1174 LILETSPYLQLSVTQSSQLTA-SVMHLPFPGKHLLTSVMHFHASVTQLPASVTQLPVSVK 1232

Query: 317  GTLRPFHGEKLGLNML*SLLVSLPLQIKHLLTWREVLKKLLYQLPVLMPPCLLWVLT*KL 496
              L         +  L + +  LP+  KHL T    L   +  LP  +    + V     
Sbjct: 1233 HLLTSVMHLHASVTHLPASVTQLPVSAKHLPTSVMHLHASVTHLPAFVTQLPVSVKHLPT 1292

Query: 497  MTPLLRSS-QMLLAPQTVLPHLQRLFMITLKLLRXLMTTVHAT 622
                L +S   L A  T LP       +++K L   +  +HA+
Sbjct: 1293 FVMHLHASVTHLPASATQLPASATQLPVSVKHLPTSVMHLHAS 1335


>SB_28980| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 271

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = -2

Query: 155 FSIEARSTKRPMRPNPLIPIFDMLSASYRKFVE*LTTTTYAQYKMEF*NR 6
           F+   RSTKRP RP   +P+   +   + +    L +   +    E+ N+
Sbjct: 9   FAASKRSTKRPRRPQQKMPVLATVQEKFNELQTLLNSLKSSCNNFEYSNK 58


>SB_28746| Best HMM Match : UPF0193 (HMM E-Value=0.31)
          Length = 927

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = -2

Query: 155 FSIEARSTKRPMRPNPLIPIFDMLSASYRKFVE*LTTTTYAQYKMEF*NR 6
           F+   RSTKRP RP   +P+   +   + +    L +   +    E+ N+
Sbjct: 233 FAASKRSTKRPRRPQQKMPVLATVQEKFNELQTLLNSLKSSCNNFEYSNK 282


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,100,545
Number of Sequences: 59808
Number of extensions: 419480
Number of successful extensions: 990
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)