Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11i18r
(572 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0797 - 23230441-23230757,23230922-23231069,23231352-232325... 31 0.86
10_08_0253 - 16196275-16196307,16196425-16196550,16196643-161967... 29 2.6
04_04_1675 - 35280705-35281493,35281544-35281795 29 3.5
01_05_0573 + 23359968-23361044,23361112-23361255,23361458-23361841 28 6.1
08_02_0269 + 15087481-15087893,15087978-15088074,15089068-150891... 27 8.0
02_02_0401 + 9847398-9847463,9848916-9849019,9849873-9849876,984... 27 8.0
>12_02_0797 -
23230441-23230757,23230922-23231069,23231352-23232562,
23232639-23232894,23234073-23234309
Length = 722
Score = 30.7 bits (66), Expect = 0.86
Identities = 21/66 (31%), Positives = 30/66 (45%)
Frame = -3
Query: 309 SRTLGGPVPDMNDHEAMQRFFLQQIQXXXXXXXXXXXXXGVEHLGQAVAVCGQTEQLLSV 130
S+T G VP N EA+ L I +EHL A+++CGQT L
Sbjct: 262 SQTEGSYVPKNNLEEAI--LLLMIILKKWYLGKTHWDPSVMEHLTFALSLCGQTSVLAKH 319
Query: 129 LQQTMP 112
L++ +P
Sbjct: 320 LEEVLP 325
>10_08_0253 - 16196275-16196307,16196425-16196550,16196643-16196741,
16196822-16197001,16197090-16197371,16197471-16199141,
16199257-16199463,16199566-16199700,16199792-16200082,
16200403-16200621,16200876-16201034,16201120-16201181,
16201257-16201383,16201460-16201693,16201777-16202003,
16202163-16202257,16202341-16202468,16202574-16202594,
16202765-16202921,16203007-16203075,16203228-16203341,
16203415-16203491,16203576-16203688,16204432-16204507,
16204592-16204756,16204825-16204952,16205049-16205130,
16205426-16205548,16205633-16205860,16205933-16206034,
16206144-16206341,16206581-16206760,16206868-16207020,
16207690-16207797,16208201-16208355,16208786-16208912,
16209825-16209914,16209986-16210127,16210303-16210379,
16210467-16210582,16210638-16210773,16211130-16211198,
16211279-16211361,16211655-16211720,16211788-16211974,
16212054-16213547,16213635-16214165,16214234-16214363,
16214407-16215878,16216359-16216364,16216750-16217055,
16217364-16217468,16217577-16217772,16217862-16217929,
16218853-16220631,16221026-16221151,16221604-16221780,
16221997-16222128,16223461-16223498,16223710-16223788,
16224175-16224284,16224787-16224935,16225027-16225197,
16225281-16225552,16226355-16226442,16227942-16228369
Length = 5157
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +1
Query: 64 F*NFWQFLKKQMEDWSWHSLLKYTKQLFS---LSTNSHSLPEMFDSSFKITCSQQL 222
F N+ LKK+ + WHS+L+ +++ + + +H +P + +TCS L
Sbjct: 2448 FENYGNILKKESDHPIWHSILECYREIVAYHKIDVVAHPIPLLSMRLLDMTCSVTL 2503
>04_04_1675 - 35280705-35281493,35281544-35281795
Length = 346
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -3
Query: 402 CVYFDQQ-RRKDPLFKKKLRERRLNAQQNASRSRTLGGPVPDMNDH 268
C +FD + RR+D F KKL LN ++ +R + L PD D+
Sbjct: 214 CAFFDDRARRQDDTFSKKL---ALNCTKDPNRLQNLDVITPDAFDN 256
>01_05_0573 + 23359968-23361044,23361112-23361255,23361458-23361841
Length = 534
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 284 GTGPPRVRDLEAFCCAFSLRSLNFFLNSGSLRLCWSKY 397
G G P +R+L +C A R L+F L + + C Y
Sbjct: 224 GAGFPHLRELGLYCVAMEDRDLDFVLANSPVLECLGIY 261
>08_02_0269 +
15087481-15087893,15087978-15088074,15089068-15089112,
15089281-15089492,15090809-15090911,15091002-15091097,
15091405-15091473,15093341-15093588,15093640-15093759,
15093847-15094284,15094503-15094620,15095262-15095303,
15097099-15097161,15097365-15097475,15097730-15097801,
15097875-15097993,15099682-15099745,15100238-15101860
Length = 1350
Score = 27.5 bits (58), Expect = 8.0
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +1
Query: 172 LPEMFDSSFKITCSQQLFAELNL--LQEKSLHSFMIVHVWNRSTEGTRPR 315
LP FD + +++CS + ELNL + + H F V W + RP+
Sbjct: 33 LPIKFDENEEVSCSD--YKELNLRGFTDNNRHVFKKVIAWRVDLDCQRPK 80
>02_02_0401 +
9847398-9847463,9848916-9849019,9849873-9849876,
9849968-9851230
Length = 478
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 93 LLKKLPEVSERLRSSMKARSNVMQEEDV 10
LLKK P + E L S + SN++Q+ DV
Sbjct: 104 LLKKSPGLPENLSVSQSSDSNILQQCDV 131
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,205,806
Number of Sequences: 37544
Number of extensions: 291606
Number of successful extensions: 774
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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