Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11i18r
         (572 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30135| Best HMM Match : MAS20 (HMM E-Value=1.5e-06)                112   2e-25
SB_26178| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.29 
SB_3720| Best HMM Match : RVT_1 (HMM E-Value=0.0031)                   30   1.5  
SB_40708| Best HMM Match : SRCR (HMM E-Value=0)                        28   4.7  
SB_23774| Best HMM Match : Kinesin (HMM E-Value=0)                     28   4.7  
SB_41425| Best HMM Match : DCX (HMM E-Value=8.6e-06)                   28   6.2  
SB_5939| Best HMM Match : BAH (HMM E-Value=7.9e-18)                    27   8.2  
SB_54236| Best HMM Match : bZIP_1 (HMM E-Value=1.1)                    27   8.2  
SB_42168| Best HMM Match : NolV (HMM E-Value=7.1)                      27   8.2  

>SB_30135| Best HMM Match : MAS20 (HMM E-Value=1.5e-06)
          Length = 151

 Score =  112 bits (269), Expect = 2e-25
 Identities = 50/128 (39%), Positives = 79/128 (61%), Gaps = 2/128 (1%)
 Frame = -3

Query: 441 IAVGIAGTLFLGYCVYFDQQRRKDPLFKKKLRE--RRLNAQQNASRSRTLGGPVPDMNDH 268
           +  G+ G++FL YC+YFD +RR DP +KKKL E  RR  AQ+  + +  +   +PD+ D 
Sbjct: 9   VVAGVCGSMFLAYCIYFDYKRRSDPDYKKKLIEKRRRERAQRQEADAADMQSRIPDLTDT 68

Query: 267 EAMQRFFLQQIQXXXXXXXXXXXXXGVEHLGQAVAVCGQTEQLLSVLQQTMPAPIFHLLL 88
            A+Q+FFL+++Q              V+HL  AVAVCGQ +QLL V +QT+P  +F +L+
Sbjct: 69  AAVQKFFLEEVQIGEDLLTKGEYESAVKHLTNAVAVCGQPQQLLQVFKQTLPPAVFQMLI 128

Query: 87  KKLPEVSE 64
             + ++ +
Sbjct: 129 DNINQMKD 136


>SB_26178| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 897

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -2

Query: 571 TFSQMADIKFN*RFLRTCLYRYCA*RTIVHE*KNDGNHKNN 449
           T S ++DIK   R L++CL R C  R+++       +H+NN
Sbjct: 608 TISHVSDIKKGQRTLKSCLNRGCGFRSLLRRQSKRFSHRNN 648


>SB_3720| Best HMM Match : RVT_1 (HMM E-Value=0.0031)
          Length = 546

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = +2

Query: 5   YSTSSSCITLLLAFIEDRRRSETSGSFLRSRWKIGAGIVC*STLSNCSVCPQTATACP 178
           Y    +C+ LL +++ DRR         R+R ++G  +   ST++    CPQ +   P
Sbjct: 424 YGAQDTCLRLLESYLSDRRNRVXXXXDRRNRVRMGKDLSSYSTVNR--GCPQGSALGP 479


>SB_40708| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 1976

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 107 GAGIVC*STLSNCSVCPQTATACPRC 184
           GA   C    SNC++C +++T C  C
Sbjct: 582 GAQTKCLKCDSNCAICEESSTKCTSC 607


>SB_23774| Best HMM Match : Kinesin (HMM E-Value=0)
          Length = 805

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 403 VTQEQCSRNSDSYT*RCSCDFH 468
           V Q Q  R+ D+ T RC+CD H
Sbjct: 613 VVQRQTDRSVDNVTSRCACDTH 634


>SB_41425| Best HMM Match : DCX (HMM E-Value=8.6e-06)
          Length = 1098

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 381 RRKDPLFKKKLRERRLNAQQNASRSRTLGGPVPDM 277
           RR  PL+KKK R   + A QN +R        PD+
Sbjct: 163 RRNKPLYKKKPRTLCVQAFQNGNRDNYARVTAPDL 197


>SB_5939| Best HMM Match : BAH (HMM E-Value=7.9e-18)
          Length = 1086

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 408 GYCVYFDQQRRKDPLFKKKLRERRLNAQQN 319
           G CVY D QR   P F   ++E R + ++N
Sbjct: 75  GDCVYIDSQRPDVPYFICSIKEFRTSRREN 104


>SB_54236| Best HMM Match : bZIP_1 (HMM E-Value=1.1)
          Length = 1188

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/71 (19%), Positives = 34/71 (47%)
 Frame = +3

Query: 144 VQSVHKQPQPARDVRLQLQDHLQPATLRRVESVARKISA*LHDRSCLEQVHRGYETSKHF 323
           +Q V K+ Q +   ++   + ++      ++S  +++   + D+S  E+ H G E S   
Sbjct: 242 LQKVEKETQASMPAQVGSAEDVRDVIYEEIKSAQQQLPQ-MEDKSVFEETHAGKEISAVT 300

Query: 324 VVHSVFALSTS 356
           V +  F ++ +
Sbjct: 301 VKNQTFHINNA 311


>SB_42168| Best HMM Match : NolV (HMM E-Value=7.1)
          Length = 414

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +2

Query: 5   YSTSSSCITLLLAFIEDRRRSETSGSFLRSRWKIGAG 115
           Y    +C+ LL +++ DRR     G +L S   +  G
Sbjct: 361 YGAQDTCLRLLESYLSDRRNRVRMGKYLSSYSTVNRG 397


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,419,297
Number of Sequences: 59808
Number of extensions: 335155
Number of successful extensions: 987
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)