Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11i18r
         (572 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74472-2|CAA98945.1|  188|Caenorhabditis elegans Hypothetical pr...   103   7e-23
Z81522-3|CAB04234.2|  167|Caenorhabditis elegans Hypothetical pr...    37   0.012
U39999-3|AAR85904.2|  114|Caenorhabditis elegans Insulin related...    33   0.14 
AC026301-5|AAK68894.1|  745|Caenorhabditis elegans Hypothetical ...    31   0.77 
Z74028-2|CAA98428.1| 1058|Caenorhabditis elegans Hypothetical pr...    29   2.3  
U28731-5|AAA68299.1|  125|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AC006608-10|AAF39754.1|  801|Caenorhabditis elegans Hypothetical...    29   2.3  
U80444-4|AAB37790.1|  531|Caenorhabditis elegans Importin alpha ...    27   9.5  
U53336-7|AAA96179.1|  642|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AL023830-1|CAA19472.1|  449|Caenorhabditis elegans Hypothetical ...    27   9.5  
AF326936-1|AAG49386.1|  531|Caenorhabditis elegans importin beta...    27   9.5  
AF077541-9|AAC64633.1|  909|Caenorhabditis elegans Cysteinyl trn...    27   9.5  
AF077541-8|AAK68426.1|  908|Caenorhabditis elegans Cysteinyl trn...    27   9.5  
AF040996-1|AAB97172.1|  531|Caenorhabditis elegans importin alph...    27   9.5  

>Z74472-2|CAA98945.1|  188|Caenorhabditis elegans Hypothetical
           protein F23H12.2 protein.
          Length = 188

 Score =  103 bits (248), Expect = 7e-23
 Identities = 55/157 (35%), Positives = 85/157 (54%), Gaps = 5/157 (3%)
 Frame = -3

Query: 471 MMEITRTTLGIAVGIAGTLFLGYCVYFDQQRRKDPLFKKKLRERR---LNAQQNASRSRT 301
           ++   ++ + +A GIAG  FLGYC+YFD +R   P +K K+R++R     A   A R   
Sbjct: 5   ILGFNKSNVVLAAGIAGAAFLGYCIYFDHKRINAPDYKDKIRQKRRAQAGAGGMAPRRPA 64

Query: 300 LGG--PVPDMNDHEAMQRFFLQQIQXXXXXXXXXXXXXGVEHLGQAVAVCGQTEQLLSVL 127
             G    PD+ D   MQRFFLQ++Q             G  H+  AV +CG+++QLLS+ 
Sbjct: 65  AAGNDAAPDVTDPSQMQRFFLQEVQLGEELMAAGNVDEGAVHIANAVMLCGESQQLLSIF 124

Query: 126 QQTMPAPIFHLLLKKLPEVSERLRSSMKARSNVMQEE 16
           QQT+    F  ++++LP   ERL     A+++  + E
Sbjct: 125 QQTLSEDQFRAVVQQLPSTRERLAEMFGAKADEAENE 161


>Z81522-3|CAB04234.2|  167|Caenorhabditis elegans Hypothetical
           protein F32B4.2 protein.
          Length = 167

 Score = 36.7 bits (81), Expect = 0.012
 Identities = 30/142 (21%), Positives = 55/142 (38%), Gaps = 8/142 (5%)
 Frame = -3

Query: 444 GIAVGIAGTLFLGYCVYFDQQRRKDPLFKKKLRERRLNAQQNASRSRTLGGP-------V 286
           G+ VG A  L +    Y+ Q+++          E       ++S  R  GG        +
Sbjct: 13  GVVVGGAALLAIAAYYYWSQKKKSSDTSSATSSESNDVVMMSSSEPRADGGADSKAKFNI 72

Query: 285 PDMNDHEAMQRFFLQQIQXXXXXXXXXXXXXG-VEHLGQAVAVCGQTEQLLSVLQQTMPA 109
            D N     ++ F++Q+                  H+  A+ + G+T QLL VL+ ++  
Sbjct: 73  EDENVRRVCEKLFMEQMDLGEAYLEDEETEELGAIHMANAIVLTGETAQLLKVLRGSISP 132

Query: 108 PIFHLLLKKLPEVSERLRSSMK 43
             F  + K LP    R+   ++
Sbjct: 133 AHFANIQKYLPSADLRVHQLLQ 154


>U39999-3|AAR85904.2|  114|Caenorhabditis elegans Insulin related
           protein 15 protein.
          Length = 114

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = -2

Query: 472 NDGNHKNNVRYSCRNCGNTVLGLLCIL*PAKAQGSAVQKEVERAKTECTTKCFEVSYPRW 293
           ND   ++N  +S R+CG ++   +  L      G A+Q E+ RA   C+T C +     W
Sbjct: 23  NDFQPRDNKHHSYRSCGESLSRRVAFL----CNGGAIQTEILRALDCCSTGCTDKQIFSW 78


>AC026301-5|AAK68894.1|  745|Caenorhabditis elegans Hypothetical
           protein Y54F10BM.3 protein.
          Length = 745

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = -3

Query: 414 FLGYCVYFDQQRRKDPLFKKKLRERRLN--AQQNASRSRTLGGPVPDMNDHEA 262
           F  YC +  QQ R + + ++K  ERRL   ++ +AS++R  GG  P     E+
Sbjct: 205 FGAYCYWKVQQWRDEKMAREKAWERRLARVSEVSASKNRNAGGVDPAKRPRES 257


>Z74028-2|CAA98428.1| 1058|Caenorhabditis elegans Hypothetical
           protein C14C10.4 protein.
          Length = 1058

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -2

Query: 103 LPSAS*ETARSFRTPPILDEGEEQRNAGRR 14
           L SA+ +T ++  TPP L + +EQ N GR+
Sbjct: 18  LSSAAAQTTKNTATPPPLKQQQEQSNDGRK 47


>U28731-5|AAA68299.1|  125|Caenorhabditis elegans Hypothetical
           protein F12A10.6 protein.
          Length = 125

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
 Frame = +2

Query: 305 RDLEAFCCAFSLRSLNFFLNSGSLRLCWS----KYTQ*PKNSVPAI 430
           RD E    A  +       NSG+L +CW     ++   P+NS+PAI
Sbjct: 51  RDKEKVRQAVEMVGAAKIFNSGNLPICWKFQFRQFADLPENSIPAI 96


>AC006608-10|AAF39754.1|  801|Caenorhabditis elegans Hypothetical
           protein C15F1.2 protein.
          Length = 801

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +1

Query: 169 SLPEMFDSSFKITCSQQLFAELNLLQEKSLH 261
           SL  + ++SF+ + S++ F + NL+QEK  H
Sbjct: 683 SLRRLLNTSFEYSKSRECFHDANLIQEKCTH 713


>U80444-4|AAB37790.1|  531|Caenorhabditis elegans Importin alpha
           family protein 2 protein.
          Length = 531

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = -3

Query: 162 VCGQTEQLLSVLQQTMPAPIFHLLLKKLPEVSER 61
           V G TEQ ++ ++  +  P+ HL + +  ++SE+
Sbjct: 160 VSGSTEQTIAAVEAGVTIPLIHLSVHQSAQISEQ 193


>U53336-7|AAA96179.1|  642|Caenorhabditis elegans Hypothetical
           protein K07C11.9 protein.
          Length = 642

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
 Frame = +1

Query: 109 SWHSLLKYTKQLFSLSTNSHSLPEMFD-------SSFKITCSQQLFAELNLLQEKSLHSF 267
           S H L +  KQLFS   ++ +LP + D       S FKI   Q L  E N +    + + 
Sbjct: 290 SIHELTEQEKQLFSSICSAENLPIVLDECLKSLTSPFKIRVEQLLSTEKNAITIFKMGNI 349

Query: 268 MIVH 279
           +I +
Sbjct: 350 LIFY 353


>AL023830-1|CAA19472.1|  449|Caenorhabditis elegans Hypothetical
           protein Y26E6A.1 protein.
          Length = 449

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 381 RRKDPLFKKKLRERRLNAQQNASRSRTLGGP 289
           RR   +F++    RRL A + A  +R  GGP
Sbjct: 37  RRHREMFERARANRRLQADRGAQAARERGGP 67


>AF326936-1|AAG49386.1|  531|Caenorhabditis elegans importin beta
           binding domain proteinprotein.
          Length = 531

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = -3

Query: 162 VCGQTEQLLSVLQQTMPAPIFHLLLKKLPEVSER 61
           V G TEQ ++ ++  +  P+ HL + +  ++SE+
Sbjct: 160 VSGSTEQTIAAVEAGVTIPLIHLSVHQSAQISEQ 193


>AF077541-9|AAC64633.1|  909|Caenorhabditis elegans Cysteinyl trna
           synthetase protein1, isoform a protein.
          Length = 909

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = -3

Query: 105 IFHLLLKKLPEVSERLRSSMKARSNVMQEE 16
           +F +++KK+ + S  L  +MKA+ ++  EE
Sbjct: 308 MFEVMIKKVQQQSSALEEAMKAQDSIATEE 337


>AF077541-8|AAK68426.1|  908|Caenorhabditis elegans Cysteinyl trna
           synthetase protein1, isoform b protein.
          Length = 908

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = -3

Query: 105 IFHLLLKKLPEVSERLRSSMKARSNVMQEE 16
           +F +++KK+ + S  L  +MKA+ ++  EE
Sbjct: 307 MFEVMIKKVQQQSSALEEAMKAQDSIATEE 336


>AF040996-1|AAB97172.1|  531|Caenorhabditis elegans importin alpha 2
           protein.
          Length = 531

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = -3

Query: 162 VCGQTEQLLSVLQQTMPAPIFHLLLKKLPEVSER 61
           V G TEQ ++ ++  +  P+ HL + +  ++SE+
Sbjct: 160 VSGSTEQTIAAVEAGVTIPLIHLSVHQSAQISEQ 193


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,059,471
Number of Sequences: 27780
Number of extensions: 257962
Number of successful extensions: 881
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)