Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11i18f
(554 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F12.07 |tom20||mitochondrial TOM complex subunit Tom20|Schi... 42 8e-05
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 28 0.80
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 27 1.4
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos... 27 1.9
SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual 26 4.3
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb... 25 7.5
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 25 9.9
SPAPJ695.01c |||S. pombe specific UPF0321 family protein 3|Schiz... 25 9.9
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 25 9.9
SPAC31A2.02 |trm112||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 25 9.9
>SPAC6F12.07 |tom20||mitochondrial TOM complex subunit
Tom20|Schizosaccharomyces pombe|chr 1|||Manual
Length = 152
Score = 41.5 bits (93), Expect = 8e-05
Identities = 33/130 (25%), Positives = 53/130 (40%), Gaps = 17/130 (13%)
Frame = +3
Query: 144 IAGTLFLGYCVYFDQQRRKDPLFKKKLRERRLNAQQNASRSRTLGGPVPDMNDHEAMQ-- 317
+ T +GY +YFD +RR DP F+K L+ R + + L D+ EA+Q
Sbjct: 10 LLATAAVGYAIYFDYKRRNDPHFRKTLKRRYKKVHEAKKQEEKLATKKFDITVEEALQVV 69
Query: 318 -------------RFFLQQIQ--XXXXXXXXXXXXXXVEHLGQAVAVCGQTEQLLSVLQQ 452
FF+QQ+ A+ V Q +L ++ ++
Sbjct: 70 ASTPVPSSAEEKELFFMQQVARGEQLFQQQPDNIKESAACFYSALKVYPQPVELFAIYER 129
Query: 453 TMPAPIFHLL 482
T+P PI +LL
Sbjct: 130 TVPEPIMNLL 139
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 28.3 bits (60), Expect = 0.80
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +3
Query: 189 QRRKDPLFKKKLRERRLNAQQNASRSRTLGGPVPDM--NDHEAMQRFFLQQIQ 341
Q R+ L K++ R+N+Q NA + LG P PD N Q+ F QQ Q
Sbjct: 406 QHRQQQL--NKIQNARMNSQ-NAPNTNKLGNPQPDNTGNPQAFSQQAFAQQQQ 455
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 27.5 bits (58), Expect = 1.4
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +3
Query: 126 LGIAVGIAGTLFLGYCVYF-DQQRRKDP 206
LG+ +G+ ++F GYC F D++ K P
Sbjct: 319 LGLIMGVFNSVFAGYCTIFCDEEVLKTP 346
>SPBC409.12c |||nuclear telomere cap complex subunit
Stn1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 27.1 bits (57), Expect = 1.9
Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -1
Query: 488 LKKQMEDW-SWHSLLKYTKQLFSLSTNSHSL 399
L+ ++W +W ++Y K L +S N HS+
Sbjct: 126 LRDPNDEWKAWQKRMRYKKNLTKISKNHHSI 156
>SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 415
Score = 25.8 bits (54), Expect = 4.3
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Frame = +1
Query: 298 TIMKLCR--DFSCNRFNSAKSCW 360
T+ K+C+ + SC RFN K W
Sbjct: 84 TVQKVCKKLNISCRRFNFEKEYW 106
>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 515
Score = 25.0 bits (52), Expect = 7.5
Identities = 21/60 (35%), Positives = 31/60 (51%)
Frame = -1
Query: 443 YTKQLFSLSTNSHSLPEMFDSSFKITCSQQLFAELNLLQEKSLHSFMIVHVWNRSTEGTR 264
+T QL L T S+PE+ + K + S +LF + L++ S+ I H NRS E R
Sbjct: 67 FTLQLGDLITEHTSVPELNEILDKFSQSNELFT-MRFLEKASI----IAHK-NRSAELAR 120
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 24.6 bits (51), Expect = 9.9
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = -1
Query: 449 LKYTKQLFSLSTNSHSLPEMFDSSFKITCSQQLFAELNLLQEKSLH 312
LK+ F LS + +S+ F+ +++ QQLF E L ++LH
Sbjct: 398 LKFLLFSFRLSIHDNSICFPFNLIQELSSLQQLFVENALPYSEALH 443
>SPAPJ695.01c |||S. pombe specific UPF0321 family protein
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 117
Score = 24.6 bits (51), Expect = 9.9
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -1
Query: 446 KYTKQLFSLSTNSHSLPEMFDSSFKI 369
+YT + TNS PE F+SS +
Sbjct: 84 QYTTDCYIFDTNSDDKPETFNSSIHL 109
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 24.6 bits (51), Expect = 9.9
Identities = 15/68 (22%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Frame = -1
Query: 485 KKQMEDWSWHSLLKYTKQLFSLSTNSHSLPEMFD---SSFKITCSQQLFAELNLLQEKSL 315
KK+ ++W + LL+ + + S NS L +D + K S++ E++L +
Sbjct: 388 KKERDEWIRNQLLQINRNINSTKENSDYLKTEYDEMENELKAKLSRKKEIEISLESQGDR 447
Query: 314 HSFMIVHV 291
S ++ ++
Sbjct: 448 MSQLLANI 455
>SPAC31A2.02 |trm112||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 126
Score = 24.6 bits (51), Expect = 9.9
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -1
Query: 494 QFLKKQMEDWSWHSLLKYTKQLFSLSTNSHSLPEMFDSSFKI 369
+FL M W++LLK T+QL + S P++ D S ++
Sbjct: 42 EFLIGIMPRIDWNALLKTTRQLGNYSLPDEK-PDLVDDSDEV 82
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,221,514
Number of Sequences: 5004
Number of extensions: 42489
Number of successful extensions: 135
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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