Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11i18f
         (554 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0797 - 23230441-23230757,23230922-23231069,23231352-232325...    31   0.82 
10_08_0253 - 16196275-16196307,16196425-16196550,16196643-161967...    29   2.5  
04_04_1675 - 35280705-35281493,35281544-35281795                       29   3.3  
01_05_0573 + 23359968-23361044,23361112-23361255,23361458-23361841     28   5.8  
08_02_0269 + 15087481-15087893,15087978-15088074,15089068-150891...    27   7.6  

>12_02_0797 -
           23230441-23230757,23230922-23231069,23231352-23232562,
           23232639-23232894,23234073-23234309
          Length = 722

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 21/66 (31%), Positives = 30/66 (45%)
 Frame = +3

Query: 264 SRTLGGPVPDMNDHEAMQRFFLQQIQXXXXXXXXXXXXXXVEHLGQAVAVCGQTEQLLSV 443
           S+T G  VP  N  EA+    L  I               +EHL  A+++CGQT  L   
Sbjct: 262 SQTEGSYVPKNNLEEAI--LLLMIILKKWYLGKTHWDPSVMEHLTFALSLCGQTSVLAKH 319

Query: 444 LQQTMP 461
           L++ +P
Sbjct: 320 LEEVLP 325


>10_08_0253 - 16196275-16196307,16196425-16196550,16196643-16196741,
            16196822-16197001,16197090-16197371,16197471-16199141,
            16199257-16199463,16199566-16199700,16199792-16200082,
            16200403-16200621,16200876-16201034,16201120-16201181,
            16201257-16201383,16201460-16201693,16201777-16202003,
            16202163-16202257,16202341-16202468,16202574-16202594,
            16202765-16202921,16203007-16203075,16203228-16203341,
            16203415-16203491,16203576-16203688,16204432-16204507,
            16204592-16204756,16204825-16204952,16205049-16205130,
            16205426-16205548,16205633-16205860,16205933-16206034,
            16206144-16206341,16206581-16206760,16206868-16207020,
            16207690-16207797,16208201-16208355,16208786-16208912,
            16209825-16209914,16209986-16210127,16210303-16210379,
            16210467-16210582,16210638-16210773,16211130-16211198,
            16211279-16211361,16211655-16211720,16211788-16211974,
            16212054-16213547,16213635-16214165,16214234-16214363,
            16214407-16215878,16216359-16216364,16216750-16217055,
            16217364-16217468,16217577-16217772,16217862-16217929,
            16218853-16220631,16221026-16221151,16221604-16221780,
            16221997-16222128,16223461-16223498,16223710-16223788,
            16224175-16224284,16224787-16224935,16225027-16225197,
            16225281-16225552,16226355-16226442,16227942-16228369
          Length = 5157

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = -1

Query: 509  F*NFWQFLKKQMEDWSWHSLLKYTKQLFS---LSTNSHSLPEMFDSSFKITCSQQL 351
            F N+   LKK+ +   WHS+L+  +++ +   +   +H +P +      +TCS  L
Sbjct: 2448 FENYGNILKKESDHPIWHSILECYREIVAYHKIDVVAHPIPLLSMRLLDMTCSVTL 2503


>04_04_1675 - 35280705-35281493,35281544-35281795
          Length = 346

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +3

Query: 171 CVYFDQQ-RRKDPLFKKKLRERRLNAQQNASRSRTLGGPVPDMNDH 305
           C +FD + RR+D  F KKL    LN  ++ +R + L    PD  D+
Sbjct: 214 CAFFDDRARRQDDTFSKKL---ALNCTKDPNRLQNLDVITPDAFDN 256


>01_05_0573 + 23359968-23361044,23361112-23361255,23361458-23361841
          Length = 534

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -2

Query: 289 GTGPPRVRDLEAFCCAFSLRSLNFFLNSGSLRLCWSKY 176
           G G P +R+L  +C A   R L+F L +  +  C   Y
Sbjct: 224 GAGFPHLRELGLYCVAMEDRDLDFVLANSPVLECLGIY 261


>08_02_0269 +
           15087481-15087893,15087978-15088074,15089068-15089112,
           15089281-15089492,15090809-15090911,15091002-15091097,
           15091405-15091473,15093341-15093588,15093640-15093759,
           15093847-15094284,15094503-15094620,15095262-15095303,
           15097099-15097161,15097365-15097475,15097730-15097801,
           15097875-15097993,15099682-15099745,15100238-15101860
          Length = 1350

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = -1

Query: 401 LPEMFDSSFKITCSQQLFAELNL--LQEKSLHSFMIVHVWNRSTEGTRPR 258
           LP  FD + +++CS   + ELNL    + + H F  V  W    +  RP+
Sbjct: 33  LPIKFDENEEVSCSD--YKELNLRGFTDNNRHVFKKVIAWRVDLDCQRPK 80


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,598,934
Number of Sequences: 37544
Number of extensions: 275526
Number of successful extensions: 711
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)