Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11i17r
(382 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0189 + 1578935-1578950,1579227-1579390,1579493-1579605,157... 31 0.31
02_05_0331 + 28003454-28003912,28004649-28004873,28005017-280053... 29 0.94
03_05_1011 + 29658144-29658310,29659531-29659676,29660526-296606... 29 1.2
11_04_0474 + 18162538-18163731,18163800-18163855,18163951-181640... 28 2.9
06_03_0924 - 25976629-25976979,25977471-25978424,25978512-259785... 28 2.9
11_06_0150 - 20640535-20640600,20641299-20641451,20641567-20641830 27 3.8
02_05_1341 - 35801987-35802472 27 3.8
07_03_1389 + 26212117-26212119,26212721-26212875,26213402-262134... 27 6.6
08_02_0227 - 14485676-14487316 26 8.7
01_01_0734 + 5726326-5727517,5727587-5727771,5727776-5728756 26 8.7
>08_01_0189 +
1578935-1578950,1579227-1579390,1579493-1579605,
1579850-1580399,1580514-1580813,1581093-1581133,
1581359-1581606,1581983-1582086,1582177-1582323
Length = 560
Score = 31.1 bits (67), Expect = 0.31
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 174 RNPDVSWNKKTNPEPWEAYRNKQYKFYSPIRDY 76
R +V WN + E EAYR K+ P+RD+
Sbjct: 526 RKYNVKWNDEVTAEDMEAYRMKRIHHDDPMRDF 558
>02_05_0331 +
28003454-28003912,28004649-28004873,28005017-28005370,
28005673-28005702,28006869-28007342
Length = 513
Score = 29.5 bits (63), Expect = 0.94
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -2
Query: 216 GCGGAVFYTLRLALRNPDVSWNKKTNPEP 130
GC AV TL AL + KKTNP+P
Sbjct: 385 GCNAAVMSTLLSALVAVEACLGKKTNPQP 413
>03_05_1011 +
29658144-29658310,29659531-29659676,29660526-29660602,
29660682-29660804,29661817-29661924,29661995-29662075,
29662157-29662309,29662469-29662540,29662745-29662863,
29662958-29663071,29663176-29663221,29664865-29664933,
29665662-29665808,29666410-29666706
Length = 572
Score = 29.1 bits (62), Expect = 1.2
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = -3
Query: 170 ILMYLGTRRPTLNHGRLTGTSSTSSILPSETTLRRNLLPPNTKP 39
I M + TR P GR T + TS +PS+ +R +L PN P
Sbjct: 481 ISMDINTRPPRRRSGRYT-QAKTSQHMPSDIDIRDSLDKPNPVP 523
>11_04_0474 +
18162538-18163731,18163800-18163855,18163951-18164011,
18164107-18165495,18166024-18166635,18166706-18166852,
18166941-18167209,18167322-18167412,18167500-18167757,
18168376-18168450,18168937-18168945
Length = 1386
Score = 27.9 bits (59), Expect = 2.9
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +2
Query: 140 LVFLFQDTSGLRKARRRV*NTAPPHPIPTHTYRG 241
L FL +DT G+ A RRV N A P+P T G
Sbjct: 671 LKFLNRDTGGVADANRRV-NFAEPNPSKDRTMGG 703
>06_03_0924 -
25976629-25976979,25977471-25978424,25978512-25978565,
25979135-25979254,25979357-25979532,25979624-25980107,
25980541-25980744,25981671-25981877,25982179-25982271,
25982433-25982621,25983364-25983423,25983591-25983927,
25984195-25984432,25984614-25984816,25985549-25986554,
25987125-25987290,25987715-25987824,25987944-25988195,
25988360-25988402,25988488-25988550,25989512-25989624,
25990787-25990838
Length = 1824
Score = 27.9 bits (59), Expect = 2.9
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 159 IHQDYAKPDAEYRTQLHHILSPHIHTEGSKPYASSNLRGSV 281
I ++Y P+ E T+ H+LS + + YAS N + SV
Sbjct: 105 IDEEYDGPEVEAATEEDHLLSKKDYFSSNAVYASVNSKVSV 145
>11_06_0150 - 20640535-20640600,20641299-20641451,20641567-20641830
Length = 160
Score = 27.5 bits (58), Expect = 3.8
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +2
Query: 161 TSGLRKARR-RV*NTAPPHPIPTHTYRG 241
TS R A+R R+ PP P PTH RG
Sbjct: 3 TSAARAAKRARIAAPPPPTPTPTHLRRG 30
>02_05_1341 - 35801987-35802472
Length = 161
Score = 27.5 bits (58), Expect = 3.8
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = -3
Query: 212 VVELCSILCVWLCVILMYLGTRRPTLNHGRLTGTSSTSSILPSETT 75
VV L S+LC +CV + L R G T T++T++ P+ T+
Sbjct: 2 VVILASLLCALICVAGLALVARCACRRRGAAT-TTTTTTTTPAATS 46
>07_03_1389 +
26212117-26212119,26212721-26212875,26213402-26213479,
26214211-26214375,26214453-26214554,26214661-26214786,
26215454-26215490
Length = 221
Score = 26.6 bits (56), Expect = 6.6
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -2
Query: 174 RNPDVSWNKKTNPEPWEAYRNKQYKFYSPIRDYSKEESP 58
R+P S + +P P A R + + YSP+ S+ SP
Sbjct: 158 RSPYRSPSYSRSPSPRYARRRMRERSYSPVESRSRSRSP 196
>08_02_0227 - 14485676-14487316
Length = 546
Score = 26.2 bits (55), Expect = 8.7
Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Frame = +3
Query: 111 CSCKPPMVQG-WSSCSKIHQDYAKPDAEYRTQLHHI 215
C P G SS S YA P EY +LHH+
Sbjct: 133 CQIDAPAGAGPLSSSSPPRYTYAMPGPEYNLRLHHL 168
>01_01_0734 + 5726326-5727517,5727587-5727771,5727776-5728756
Length = 785
Score = 26.2 bits (55), Expect = 8.7
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 104 TSSILPSETTLRRNLLPPNTKPVFLILIQLYY 9
T S+LP + ++ L PN V LI LYY
Sbjct: 179 TDSLLPGQRLVQGMRLKPNALAVNLIASDLYY 210
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,078,504
Number of Sequences: 37544
Number of extensions: 243858
Number of successful extensions: 643
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -