Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11i17f
         (427 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr...    28   2.4  
Z92829-5|CAB07345.1|  324|Caenorhabditis elegans Hypothetical pr...    28   3.2  
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t...    28   3.2  
AF045640-7|AAU05589.1|  978|Caenorhabditis elegans Novel channel...    28   3.2  
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr...    27   4.3  
AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical ...    27   4.3  
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t...    27   5.6  
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel...    27   5.6  
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel...    27   5.6  
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel...    27   5.6  
U41263-5|AAC24427.1|  400|Caenorhabditis elegans Hypothetical pr...    27   7.4  
AC024801-9|AAF59653.3|  791|Caenorhabditis elegans Hypothetical ...    27   7.4  
Z70718-10|CAA94679.1|  512|Caenorhabditis elegans Hypothetical p...    26   9.8  
Z69385-9|CAA93425.4|  152|Caenorhabditis elegans Hypothetical pr...    26   9.8  
Z68879-11|CAA93090.1|  512|Caenorhabditis elegans Hypothetical p...    26   9.8  
AL031627-22|CAI79188.1|  213|Caenorhabditis elegans Hypothetical...    26   9.8  

>U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical protein
            F40H6.5 protein.
          Length = 1288

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = +3

Query: 231  TRRPT---LNHGRLTGTSSTSSILPSETTLRRNLLPPNT 338
            T+RPT   L  G  + +SST S   S TT     LPP T
Sbjct: 950  TQRPTSPILTSGATSTSSSTESTTTSPTTSTTTTLPPTT 988


>Z92829-5|CAB07345.1|  324|Caenorhabditis elegans Hypothetical
           protein F10A3.5 protein.
          Length = 324

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = +2

Query: 170 CGGAVFYTLRLALRNPDVSWNKKTNPEPWEAY--RNKQYKFYSPIRDYSKEESPAPKY 337
           C  A+++   L L +P    +++  PE WE+Y  +  +Y +  P   Y+   +   K+
Sbjct: 141 CNSAIWFFCFLVLNSPSPMKDEELFPEFWESYCLKPNEYTYTGPHYYYTDNSTGEWKF 198


>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
           voltage-gatedion channel alpha-1 subunit protein.
          Length = 1797

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 17/48 (35%), Positives = 21/48 (43%)
 Frame = +2

Query: 191 TLRLALRNPDVSWNKKTNPEPWEAYRNKQYKFYSPIRDYSKEESPAPK 334
           +LR +L N        T      A RNKQ+  YS   D S+    APK
Sbjct: 728 SLRCSLNNLLEKSRSMTGKFLQTAVRNKQFNMYSENGDLSRPSDSAPK 775


>AF045640-7|AAU05589.1|  978|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 1, isoform
           b protein.
          Length = 978

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 17/48 (35%), Positives = 21/48 (43%)
 Frame = +2

Query: 191 TLRLALRNPDVSWNKKTNPEPWEAYRNKQYKFYSPIRDYSKEESPAPK 334
           +LR +L N        T      A RNKQ+  YS   D S+    APK
Sbjct: 786 SLRCSLNNLLEKSRSMTGKFLQTAVRNKQFNMYSENGDLSRPSDSAPK 833


>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
           presynaptic morphologyprotein 1 protein.
          Length = 3766

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
 Frame = -3

Query: 281 CTACSCKPPMVQGWSSCSKIHQDYAKP----DAEYRTQLHHILSPHIHTEGSKPYASSNL 114
           C   +CKP +++  + C K+ ++  K     D + +   H IL+         P+A   +
Sbjct: 39  CAENTCKPDILRVPAHCGKLDKEEEKSKTPLDQQQQINFHDILNSKFVVGPPSPFALVAI 98

Query: 113 RGSVLA 96
             S+LA
Sbjct: 99  AKSILA 104


>AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical
           protein F07B7.12 protein.
          Length = 1900

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
 Frame = -3

Query: 281 CTACSCKPPMVQGWSSCSKIHQDYAKP----DAEYRTQLHHILSPHIHTEGSKPYASSNL 114
           C   +CKP +++  + C K+ ++  K     D + +   H IL+         P+A   +
Sbjct: 39  CAENTCKPDILRVPAHCGKLDKEEEKSKTPLDQQQQINFHDILNSKFVVGPPSPFALVAI 98

Query: 113 RGSVLA 96
             S+LA
Sbjct: 99  AKSILA 104


>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
           voltage-gatedion channel alpha-1 subunit protein.
          Length = 1831

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 260 AYRNKQYKFYSPIRDYSKEESPAPK 334
           A RNKQ+  YS   D S+    APK
Sbjct: 785 AVRNKQFNMYSENGDLSRPSDSAPK 809


>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 1, isoform
           a protein.
          Length = 1562

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 260 AYRNKQYKFYSPIRDYSKEESPAPK 334
           A RNKQ+  YS   D S+    APK
Sbjct: 843 AVRNKQFNMYSENGDLSRPSDSAPK 867


>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 1, isoform
           c protein.
          Length = 1913

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 260 AYRNKQYKFYSPIRDYSKEESPAPK 334
           A RNKQ+  YS   D S+    APK
Sbjct: 896 AVRNKQFNMYSENGDLSRPSDSAPK 920


>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 1, isoform
           d protein.
          Length = 1861

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 260 AYRNKQYKFYSPIRDYSKEESPAPK 334
           A RNKQ+  YS   D S+    APK
Sbjct: 815 AVRNKQFNMYSENGDLSRPSDSAPK 839


>U41263-5|AAC24427.1|  400|Caenorhabditis elegans Hypothetical
           protein T19D12.7 protein.
          Length = 400

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -3

Query: 239 SSCSKIHQDYAKPDAEYRTQLHHILSPHIHTEGSKPYASSNLRGSVLA 96
           S C  +   Y   D  Y T LHH+L   IH   + P +S + RG  ++
Sbjct: 69  SMCHLLRSSYPDYDISYLTSLHHLL---IHF--NIPSSSYSARGKTMS 111


>AC024801-9|AAF59653.3|  791|Caenorhabditis elegans Hypothetical
           protein Y50D7A.1 protein.
          Length = 791

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
 Frame = -1

Query: 343 SLVFGGRRFLLRVVSDGRIELVLL-VPVSLPWFRVGLLVPRYIRITQSQTQSIEHSSTTS 167
           SLV  G + +L   +D R       VP  L +F       RY+  T +   SI HS+  S
Sbjct: 200 SLVTWGTQLILFGGNDNRRRCPFANVPPELHYFDTSTSTWRYVPATGNSPSSIGHSAVVS 259

Query: 166 YPHTYI 149
             + ++
Sbjct: 260 GDYMFV 265


>Z70718-10|CAA94679.1|  512|Caenorhabditis elegans Hypothetical
           protein C04G2.11 protein.
          Length = 512

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -3

Query: 71  KLEKTVHKLNIAVDIDIDCRYYI 3
           K+   V ++ + +D+D DCR Y+
Sbjct: 479 KMSNGVKRVTVGLDVDYDCRPYL 501


>Z69385-9|CAA93425.4|  152|Caenorhabditis elegans Hypothetical
           protein ZK593.2 protein.
          Length = 152

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +3

Query: 186 SILCVWLCVILMYLGTR-RPTLNHGRLTGTSST 281
           S+LCV+LC+++    TR RP+  H   T    T
Sbjct: 5   SLLCVFLCILISAPFTRSRPSEEHPMYTAARLT 37


>Z68879-11|CAA93090.1|  512|Caenorhabditis elegans Hypothetical
           protein C04G2.11 protein.
          Length = 512

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -3

Query: 71  KLEKTVHKLNIAVDIDIDCRYYI 3
           K+   V ++ + +D+D DCR Y+
Sbjct: 479 KMSNGVKRVTVGLDVDYDCRPYL 501


>AL031627-22|CAI79188.1|  213|Caenorhabditis elegans Hypothetical
           protein Y102A5C.36 protein.
          Length = 213

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 171 HPIPTHTYRGIKALCFFKLERLSPCILNYLI 79
           H IP     G+K LCFF    +S  IL +L+
Sbjct: 5   HLIPRALLLGLKNLCFFVFPFVSFIILMFLV 35


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,818,959
Number of Sequences: 27780
Number of extensions: 211688
Number of successful extensions: 633
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)