Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11i17f
(427 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g41360.1 68415.m05105 F-box family protein similar to SKP1 in... 31 0.43
At4g02540.1 68417.m00347 DC1 domain-containing protein contains ... 30 0.75
At3g49210.1 68416.m05378 expressed protein 30 0.75
At1g66450.1 68414.m07549 DC1 domain-containing protein contains ... 29 1.00
At1g65660.1 68414.m07450 zinc knuckle (CCHC-type) family protein... 29 1.00
At4g26380.1 68417.m03795 DC1 domain-containing protein contains ... 28 2.3
At2g22030.1 68415.m02615 kelch repeat-containing F-box family pr... 28 2.3
At2g07560.1 68415.m00875 ATPase, plasma membrane-type, putative ... 28 2.3
At1g15980.1 68414.m01917 expressed protein 28 2.3
At4g29140.1 68417.m04170 MATE efflux protein-related several hyp... 27 5.3
At1g34200.1 68414.m04243 oxidoreductase family protein similar t... 27 5.3
At3g49200.1 68416.m05377 hypothetical protein 27 7.0
At2g44600.1 68415.m05552 expressed protein 27 7.0
At5g66470.1 68418.m08382 expressed protein 26 9.3
At5g13250.1 68418.m01522 hypothetical protein 26 9.3
At3g23740.1 68416.m02985 expressed protein 26 9.3
At3g04900.1 68416.m00532 heavy-metal-associated domain-containin... 26 9.3
At2g07300.1 68415.m00837 hypothetical protein 26 9.3
At1g61540.1 68414.m06933 kelch repeat-containing F-box family pr... 26 9.3
>At2g41360.1 68415.m05105 F-box family protein similar to SKP1
interacting partner 6 [Arabidopsis thaliana]
GI:10716957; contains Pfam profile PF00646: F-box domain
Length = 373
Score = 30.7 bits (66), Expect = 0.43
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +1
Query: 334 ILNCFSNIDQLYYENFSCIKL 396
+LNC + + + YYEN SC+ +
Sbjct: 19 VLNCLARVPRRYYENISCVSV 39
>At4g02540.1 68417.m00347 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 822
Score = 29.9 bits (64), Expect = 0.75
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -3
Query: 293 ENRTCTACSCKPPMVQGWSSCSKIHQDYAKPDAEYRTQLHHILSPHIHT 147
EN+ C AC+ P + SC + + A +R ++HH PH+ T
Sbjct: 552 ENKLCQACTT-PIYFGNFFSCMQCDFILHEKCANFRRKIHHPTHPHLLT 599
>At3g49210.1 68416.m05378 expressed protein
Length = 518
Score = 29.9 bits (64), Expect = 0.75
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = -1
Query: 253 WFRVGLLVPRYIRITQSQTQSIEHSSTTSYPHTYI 149
W R ++V ++ ++ QTQ+IE+ + ++ TY+
Sbjct: 92 WVRTNVVVTDHVIVSDIQTQNIENGNADAFLETYV 126
>At1g66450.1 68414.m07549 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 700
Score = 29.5 bits (63), Expect = 1.00
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -3
Query: 293 ENRTCTACSCKPPMVQG-WSSCSKIHQDYAKPDAEYRTQLHHILSPHIHT 147
EN+ C AC P+ G + SC K + + A + ++HH + PH+ T
Sbjct: 422 ENKLCQACIT--PIYSGKFYSCMKCNFILHEECANFSRKIHHPIHPHMLT 469
>At1g65660.1 68414.m07450 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 535
Score = 29.5 bits (63), Expect = 1.00
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 209 RNPDVSWNKKTNPEPWEAYRNKQYKFYSPIRDY 307
R +V +N PE EAYR K+ P++D+
Sbjct: 502 RKYNVKYNNDVTPEEMEAYRMKRVHHEDPMKDF 534
>At4g26380.1 68417.m03795 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 1016
Score = 28.3 bits (60), Expect = 2.3
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = -3
Query: 293 ENRTCTACSCKPPMVQGWSSCSKIHQDYAKPDAEYRTQLHHILSPHIHT 147
E++ C AC P + SC++ + + A + ++HH + PH+ T
Sbjct: 762 EDKLCQAC-VMPIYFGNFYSCTQCNYILHEACANFSRKMHHPVHPHVLT 809
>At2g22030.1 68415.m02615 kelch repeat-containing F-box family
protein low similarity to SKP1 interacting partner 6
[Arabidopsis thaliana] GI:10716957; contains Pfam
profiles PF01344: Kelch motif, PF00646: F-box domain
Length = 383
Score = 28.3 bits (60), Expect = 2.3
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +1
Query: 334 ILNCFSNIDQLYYENFSCI 390
+LNC + + + YY N SC+
Sbjct: 34 VLNCLARVSRRYYPNLSCV 52
>At2g07560.1 68415.m00875 ATPase, plasma membrane-type, putative /
proton pump, putative similar to P-type
H(+)-transporting ATPase from [Phaseolus vulgaris]
GI:758250, [Lycopersicon esculentum] GI:1621440,
SP|Q03194 {Nicotiana plumbaginifolia}, [Solanum
tuberosum] GI:435001; contains InterPro accession
IPR001757: ATPase, E1-E2 type
Length = 949
Score = 28.3 bits (60), Expect = 2.3
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Frame = -1
Query: 310 RVVSDGRI---ELVLLVPVSLPWFRVGLLVPRYIRITQSQTQSIEHSSTT--SYPHTYIQ 146
+V+ DGR E +LVP L ++G +VP R+ + I+ S+ T S P T Q
Sbjct: 136 KVLRDGRWGEQEAAILVPGDLISIKLGDIVPADARLLEGDPLKIDQSALTGESLPATKHQ 195
Query: 145 RDQ 137
D+
Sbjct: 196 GDE 198
>At1g15980.1 68414.m01917 expressed protein
Length = 461
Score = 28.3 bits (60), Expect = 2.3
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Frame = +2
Query: 188 YTLRLALRNPDVSWN--KKTNP--EPWEAYRNKQYKFYSPIRDYSKEESPAP 331
+ RL R+ DVS N KK NP +P+++ + ++ S D ++E P P
Sbjct: 32 FQTRLTSRSSDVSVNLKKKNNPWLDPFDSGEDPDNEYGSLFADGKQDEDPRP 83
>At4g29140.1 68417.m04170 MATE efflux protein-related several
hypothetical proteins - Arabidopsis thaliana; contains
Pfam profile PF01554: Uncharacterized membrane protein
family
Length = 532
Score = 27.1 bits (57), Expect = 5.3
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Frame = -1
Query: 343 SLVFGGRRFLLRVVSDGRIELVLLV---PVSLPWFRVG 239
S FG RF L ++ R + LLV P+S+ WF VG
Sbjct: 123 SQAFGAHRFKLLSLTLHRTVVFLLVCCVPISVLWFNVG 160
>At1g34200.1 68414.m04243 oxidoreductase family protein similar to
AX110P [Daucus carota] GI:285739; contains Pfam profiles
PF01408: Oxidoreductase family NAD-binding Rossmann
fold, PF02894: Oxidoreductase family C-terminal
alpha/beta domain
Length = 352
Score = 27.1 bits (57), Expect = 5.3
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +3
Query: 261 LTGTSSTSSILPSETTLRRNLLPPNTKLFF*Y*SVV 368
++ ++TSSI +++ + N PPNTKL Y S++
Sbjct: 33 ISAIATTSSIEEAKSFAKSNNFPPNTKLHSSYESLL 68
>At3g49200.1 68416.m05377 hypothetical protein
Length = 507
Score = 26.6 bits (56), Expect = 7.0
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = -1
Query: 253 WFRVGLLVPRYIRITQSQTQSIEHSSTTSYPHTYI 149
W R ++V ++ I + QTQ IE+++ + +Y+
Sbjct: 90 WVRTNVVVEDHVIIPKIQTQHIENANADVFLESYV 124
>At2g44600.1 68415.m05552 expressed protein
Length = 313
Score = 26.6 bits (56), Expect = 7.0
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = -3
Query: 266 CKPPMVQGWSSCSKIHQDYAKPDAEYRTQLHHILSPHIHTEGS 138
C P+V+ +CS + PD Y +L PH+ T S
Sbjct: 252 CLSPLVRAKPNCSSNWKAKFPPDFGYSGELKSPAKPHLSTAAS 294
>At5g66470.1 68418.m08382 expressed protein
Length = 427
Score = 26.2 bits (55), Expect = 9.3
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -1
Query: 217 RITQSQTQSIEHSSTTSYPHTYIQRDQSLMLLQ 119
R+T+S Q+ H+STTSY T + + L + Q
Sbjct: 37 RVTKSHLQA--HNSTTSYGRTELSSSKKLWIRQ 67
>At5g13250.1 68418.m01522 hypothetical protein
Length = 286
Score = 26.2 bits (55), Expect = 9.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 248 QGWSSCSKIHQDYAKPDAEYRTQ 180
QGW S H++ KPD ++R Q
Sbjct: 119 QGWLRLSLGHEEDVKPDLDHRQQ 141
>At3g23740.1 68416.m02985 expressed protein
Length = 542
Score = 26.2 bits (55), Expect = 9.3
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -3
Query: 224 IHQDYAKPDAEYRTQLHHILSPHIHTEGSKPYASSNLRGS 105
++ + + PD E TQ+ H++ + GS+ SS L GS
Sbjct: 297 VNLEQSDPDKEQETQIKHVIPDTENNLGSEIPLSSPLVGS 336
>At3g04900.1 68416.m00532 heavy-metal-associated domain-containing
protein contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 208
Score = 26.2 bits (55), Expect = 9.3
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = +2
Query: 197 RLALRNPDVSWNKKTNPEPWEAYRNKQYKFYSPIRDYSKEESPAP 331
RL P V+ K P P++ Y N + + +Y +++P P
Sbjct: 160 RLKYEEPKVTPRKPPAPYPFDYYENLGFPPSDSLFNYFSDDNPQP 204
>At2g07300.1 68415.m00837 hypothetical protein
Length = 219
Score = 26.2 bits (55), Expect = 9.3
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -3
Query: 257 PMVQGWSSCSKIHQDYAKPDAEYRTQLHHIL 165
P++ GW+ C I + Y K ++ +LH IL
Sbjct: 12 PLITGWTICVMILRIYKKMLNDHSFELHLIL 42
>At1g61540.1 68414.m06933 kelch repeat-containing F-box family
protein low similarity to SKP1 interacting partner 6
[Arabidopsis thaliana] GI:10716957; contains Pfam
profiles PF01344: Kelch motif, PF00646: F-box domain
Length = 402
Score = 26.2 bits (55), Expect = 9.3
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1
Query: 334 ILNCFSNIDQLYYENFSCI 390
+LNCFS + +LYY S +
Sbjct: 35 LLNCFSLVSRLYYPTLSLV 53
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,144,488
Number of Sequences: 28952
Number of extensions: 196011
Number of successful extensions: 553
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 665183504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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