Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11i16r
         (694 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        25   0.44 
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    24   1.0  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    22   5.5  

>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -3

Query: 293 QEAPQAEESMDVSEEYAEVMNDPAFLQSVLENLPGVDPQS 174
           + A   +ES+++S+    +  DP F +S + N  G  PQ+
Sbjct: 11  ENAGMPDESINISDVIEVIETDPDFHESTMFNGGGEIPQN 50


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = +2

Query: 200 SQAHSVKMLDH--S*LLHILQKHPCSLQPGVLLVACSFALQAQ-SAP 331
           S  HS+   +H  S   H+LQ    S+ PG   V  SF L A  SAP
Sbjct: 217 SLTHSLAASNHLLSSGQHLLQDTYKSMLPGAQTVGASFGLHATGSAP 263


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = +3

Query: 243 CIFFRNIHALFSLGCFLLHAHLHCK 317
           C++  +   + SLG F++  +L  K
Sbjct: 34  CVYLTSFSVVLSLGSFIVSVYLTTK 58


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,814
Number of Sequences: 336
Number of extensions: 2712
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)