Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11i16r
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit Rpn10|...    39   8e-04
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom...    30   0.28 
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    27   3.4  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    26   4.5  
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    26   5.9  
SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2...    25   7.9  

>SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit
           Rpn10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 243

 Score = 38.7 bits (86), Expect = 8e-04
 Identities = 24/63 (38%), Positives = 31/63 (49%)
 Frame = -3

Query: 671 STGGSHLVSVPAGGCVVLSEALITSXXXXXXXXXXXXXXXXPFEFGVDPNVDPELALALR 492
           S+   HLVS+P       S  L++                  FE+GVDPN+D ELALAL 
Sbjct: 162 SSDSCHLVSIPP------SPQLLSDLVNQSPIGQGVVASQNQFEYGVDPNLDVELALALE 215

Query: 491 VSM 483
           +SM
Sbjct: 216 LSM 218


>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 597

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 17/52 (32%), Positives = 29/52 (55%)
 Frame = -3

Query: 353 DAMELSEEEQIALAMQMSMQQEAPQAEESMDVSEEYAEVMNDPAFLQSVLEN 198
           D +ELS+EE +AL  + S  +E   AEE++  +EE +    D    + + +N
Sbjct: 62  DELELSDEELVAL--ESSSDEEDGNAEENLSENEELSGKKKDAVNEEELYDN 111


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1717

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +3

Query: 237 NFCI-FFRNIHALFSLGCFLLHAHL 308
           NFCI FF+N  AL+S    +LHA L
Sbjct: 75  NFCIVFFKNWEALYSQYDGILHASL 99


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1258

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -1

Query: 100 KDPHLKRISLFTFSFSFE*IHVCK 29
           + PHL  +S+F    S+E +H+C+
Sbjct: 630 RKPHLVTVSIFGKDESYELLHICE 653


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/18 (55%), Positives = 16/18 (88%)
 Frame = -3

Query: 344 ELSEEEQIALAMQMSMQQ 291
           EL+E+EQI LAM++S+ +
Sbjct: 644 ELNEQEQIELAMRLSLME 661


>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 825

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
 Frame = +3

Query: 627 TASSWHRHKVTSP--SRCVFPI 686
           TA+SWH HK   P  S  V P+
Sbjct: 224 TATSWHAHKFLDPAESGAVIPV 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,536,964
Number of Sequences: 5004
Number of extensions: 44628
Number of successful extensions: 120
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)