Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11i16r
         (694 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2929| Best HMM Match : No HMM Matches (HMM E-Value=.)              101   6e-22
SB_18590| Best HMM Match : FYVE (HMM E-Value=8.8e-29)                  31   1.2  
SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_29875| Best HMM Match : PHD (HMM E-Value=0.0014)                    29   4.7  
SB_43816| Best HMM Match : DUF755 (HMM E-Value=6.3)                    28   8.3  

>SB_2929| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 385

 Score =  101 bits (242), Expect = 6e-22
 Identities = 83/219 (37%), Positives = 107/219 (48%), Gaps = 37/219 (16%)
 Frame = -3

Query: 689 LNGKDTSTGGSHLVSVPAGGCVVLSEALITSXXXXXXXXXXXXXXXXPFEFGVDPNVDPE 510
           LNGKD +   SHLV+VP G   +LS AL++S                 FEFGVDPN DPE
Sbjct: 144 LNGKDGNL--SHLVTVPPGP--ILSNALVSSAIVVGEDGAGAMDMGSGFEFGVDPNADPE 199

Query: 509 LALALRVSMXXXXXXXXXXXXXXXXXXXXXXXXXXXGSD---TAVERAIAMS-----LGR 354
           LALALRVSM                            SD     +++A+AMS     +GR
Sbjct: 200 LALALRVSMEEQRQRQEEESRATGTPAEGGLTTPVQASDQEEAMLQQALAMSDSAQDIGR 259

Query: 353 --------DAMELSEEEQIALAMQMSMQ-------------QEAPQAEES-MDV------ 258
                   D   +SEEEQIA AMQ+S+Q              + P+ +ES M+       
Sbjct: 260 SVPPTPMVDFGSMSEEEQIAYAMQLSLQGAGESGMSGVEEDDDDPEGKESAMETDTENQG 319

Query: 257 -SEEYAEVMNDPAFLQSVLENLPGVDPQSEAIRNAMSTI 144
            +++ +EVM DP FLQ VL  LPGVDP S AI+N M ++
Sbjct: 320 DNQDLSEVMADPDFLQRVLSTLPGVDPSSAAIQNVMGSL 358


>SB_18590| Best HMM Match : FYVE (HMM E-Value=8.8e-29)
          Length = 551

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = -3

Query: 350 AMELSEEEQIALAMQMSMQQEAPQAEESMDVSEEYAEVMNDPAFLQSVLENLP 192
           AME  ++E +A  +  ++ +   Q +ES+D    Y  +  + ++LQ  + N P
Sbjct: 458 AMEKIDQEYLAQLVNQTLAKGMEQGDESLDQEVTYKFLQANDSYLQMAIGNAP 510


>SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3176

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/50 (24%), Positives = 27/50 (54%)
 Frame = -3

Query: 398  SDTAVERAIAMSLGRDAMELSEEEQIALAMQMSMQQEAPQAEESMDVSEE 249
            ++ ++ERA+A   GRD M   +++++  +  + +   + Q E S  +  E
Sbjct: 2397 NEESIERAVAGIPGRDTMSYQQDQEVDTSEALQLLSPSVQDEPSQVIDSE 2446


>SB_29875| Best HMM Match : PHD (HMM E-Value=0.0014)
          Length = 598

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -3

Query: 275 EESMDVSEEYAEVMNDPAFLQSVLENLPG 189
           EE MDV+ ++ +++ND +  Q V+E   G
Sbjct: 284 EEQMDVNHKFLDIVNDHSLTQHVMEPTRG 312


>SB_43816| Best HMM Match : DUF755 (HMM E-Value=6.3)
          Length = 539

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = +1

Query: 166 MASLCGSTPGRFSSTLCKNAGSFITSAYSSETSMLSS 276
           +A+L  S PGR+   LCKN  +F T   +SE + LS+
Sbjct: 344 VATLKQSNPGRWWRELCKNINTFFT-WLTSEFAHLST 379


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,451,605
Number of Sequences: 59808
Number of extensions: 356412
Number of successful extensions: 868
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)