Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11i16r
         (694 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067211-11|AAK66019.1|  346|Caenorhabditis elegans Proteasome r...    55   6e-08
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl...    29   2.4  
U41544-1|AAA83183.2| 2275|Caenorhabditis elegans Hypothetical pr...    28   5.5  
EU068466-1|ABU49431.1|  801|Caenorhabditis elegans PRO-3 protein.      28   5.5  
AL132948-40|CAD31812.3|  801|Caenorhabditis elegans Hypothetical...    28   5.5  
AF043706-5|ABP57808.1|  536|Caenorhabditis elegans Hypothetical ...    28   7.3  
AF043706-3|ABP57807.1|  534|Caenorhabditis elegans Hypothetical ...    28   7.3  
Z68751-3|CAA92973.1|  760|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>AF067211-11|AAK66019.1|  346|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 10 protein.
          Length = 346

 Score = 54.8 bits (126), Expect = 6e-08
 Identities = 54/189 (28%), Positives = 83/189 (43%), Gaps = 15/189 (7%)
 Frame = -3

Query: 692 TLNGKDTSTGGSHLVSVPAGGCVVLSEALITSXXXXXXXXXXXXXXXXPF---EFGVDPN 522
           TLNGK+ S  GS L+ VP G    L++AL+ S                      FG+D  
Sbjct: 161 TLNGKEGS--GSSLIVVPQGSS--LTDALLQSSVCKNEDGQAAFGGGGNGMDNAFGMDVE 216

Query: 521 VDPELALALRVSMXXXXXXXXXXXXXXXXXXXXXXXXXXXGSDTAVERAIAMSLGRDAME 342
            DP+LALALRVSM                            +  AV     M +G     
Sbjct: 217 NDPDLALALRVSMEEERARQAAAAAANGGAADSGADAEVAAAAAAVPLE-EMDMG----A 271

Query: 341 LSEEEQIALAMQMSMQQEAPQAE-----ESMDV-------SEEYAEVMNDPAFLQSVLEN 198
           ++EE+Q+  A+++SMQ+ AP  +     E MDV        +   ++MN+P  LQ ++++
Sbjct: 272 MTEEQQLEWALRLSMQENAPAEQPQVQHEQMDVDGAPAVGGDNLDDLMNNPELLQQIVDD 331

Query: 197 LPGVDPQSE 171
           LP  + + +
Sbjct: 332 LPAANAEKD 340


>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
            anchorage protein1 protein.
          Length = 8545

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = -3

Query: 344  ELSEEEQIALAMQMSMQQEAPQAEESMDVSEEYAE-VMNDPAFLQSVLENLPGVDPQSEA 168
            E++ + Q+      S+ QE P    S+D  ++  E V N    L+++L NLP  DP ++ 
Sbjct: 3366 EIAPKLQLVSQQLQSVPQEVPA---SLDEQKQLLEDVENQKHNLENLLANLPENDPTADE 3422

Query: 167  IR 162
            +R
Sbjct: 3423 LR 3424



 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = -3

Query: 344  ELSEEEQIALAMQMSMQQEAPQAEESMDVSEEYAE-VMNDPAFLQSVLENLPGVDPQSEA 168
            E++ + Q+      S+ QE P    S+D  ++  E V N    L+++L NLP  DP ++ 
Sbjct: 4269 EIAPKLQLVSQQLQSVPQEVPA---SLDEQKQLLEDVENQKHNLENLLANLPENDPTADE 4325

Query: 167  IR 162
            +R
Sbjct: 4326 LR 4327



 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = -3

Query: 344  ELSEEEQIALAMQMSMQQEAPQAEESMDVSEEYAE-VMNDPAFLQSVLENLPGVDPQSEA 168
            E++ + Q+      S+ QE P    S+D  ++  E V N    L+++L NLP  DP ++ 
Sbjct: 5223 EIAPKLQLVSQQLQSVPQEVPA---SLDEQKQLLEDVENQKHNLENLLANLPENDPTADE 5279

Query: 167  IR 162
            +R
Sbjct: 5280 LR 5281



 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = -3

Query: 344  ELSEEEQIALAMQMSMQQEAPQAEESMDVSEEYAE-VMNDPAFLQSVLENLPGVDPQSEA 168
            E++ + Q+      S+ QE P    S+D  ++  E V N    L+++L NLP  DP ++ 
Sbjct: 6126 EIAPKLQLVSQQLQSVPQEVPA---SLDEQKQLLEDVENQKHNLENLLANLPENDPTADE 6182

Query: 167  IR 162
            +R
Sbjct: 6183 LR 6184



 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = -3

Query: 344  ELSEEEQIALAMQMSMQQEAPQAEESMDVSEEYAE-VMNDPAFLQSVLENLPGVDPQSEA 168
            E++ + Q+      S+ QE P    S+D  ++  E V N    L+++L NLP  DP ++ 
Sbjct: 7029 EIAPKLQLVSQQLQSVPQEVPA---SLDEQKQLLEDVENQKHNLENLLANLPENDPTADE 7085

Query: 167  IR 162
            +R
Sbjct: 7086 LR 7087



 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = -3

Query: 344  ELSEEEQIALAMQMSMQQEAPQAEESMDVSEEYAE-VMNDPAFLQSVLENLPGVDPQSEA 168
            E++ + Q+      S+ QE P    S+D  ++  E V N    L+++L NLP  DP ++ 
Sbjct: 7932 EIAPKLQLVSQQLQSVPQEVPA---SLDEQKQLLEDVENQKHNLENLLANLPENDPTADE 7988

Query: 167  IR 162
            +R
Sbjct: 7989 LR 7990


>U41544-1|AAA83183.2| 2275|Caenorhabditis elegans Hypothetical protein
            M03A8.2 protein.
          Length = 2275

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 20/75 (26%), Positives = 32/75 (42%)
 Frame = -3

Query: 392  TAVERAIAMSLGRDAMELSEEEQIALAMQMSMQQEAPQAEESMDVSEEYAEVMNDPAFLQ 213
            TA   +I     RDA    +EE+I   +QM+   E  +  E +   E+  +   D  F Q
Sbjct: 1736 TASAVSIGKIFERDAHSDEDEEEIIDPIQMAAALEIRELNEELGRIEQLEKKKTDDLFKQ 1795

Query: 212  SVLENLPGVDPQSEA 168
            S   +    + +S A
Sbjct: 1796 SYSSSSSETESESSA 1810


>EU068466-1|ABU49431.1|  801|Caenorhabditis elegans PRO-3 protein.
          Length = 801

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
 Frame = -3

Query: 296 QQEAPQAEESMDVSEEYAEVMNDPAFLQSVLENLPGV----DPQSEAIRNAMSTI 144
           ++E    EE +++S+E  E ++D A  ++V+E         DP+ +A +N+M  I
Sbjct: 597 EEEMDDEEEEIEISDEEEEEIDDEAEEEAVVEEEASEAVEKDPKLKASKNSMDRI 651


>AL132948-40|CAD31812.3|  801|Caenorhabditis elegans Hypothetical
           protein Y39B6A.14 protein.
          Length = 801

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
 Frame = -3

Query: 296 QQEAPQAEESMDVSEEYAEVMNDPAFLQSVLENLPGV----DPQSEAIRNAMSTI 144
           ++E    EE +++S+E  E ++D A  ++V+E         DP+ +A +N+M  I
Sbjct: 597 EEEMDDEEEEIEISDEEEEEIDDEAEEEAVVEEEASEAVEKDPKLKASKNSMDRI 651


>AF043706-5|ABP57808.1|  536|Caenorhabditis elegans Hypothetical
           protein ZC123.4b protein.
          Length = 536

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/51 (23%), Positives = 24/51 (47%)
 Frame = +3

Query: 519 YIGIYSKFERRQTRARRACSITTYQRTCYQSLRKHNTASSWHRHKVTSPSR 671
           +IG++   E  +   R +CS++        ++R   ++ + HR    SP R
Sbjct: 8   HIGVWFGLEEAERPMRASCSLSMIHHPQLTAVRSSKSSENLHRITTMSPQR 58


>AF043706-3|ABP57807.1|  534|Caenorhabditis elegans Hypothetical
           protein ZC123.4a protein.
          Length = 534

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/51 (23%), Positives = 24/51 (47%)
 Frame = +3

Query: 519 YIGIYSKFERRQTRARRACSITTYQRTCYQSLRKHNTASSWHRHKVTSPSR 671
           +IG++   E  +   R +CS++        ++R   ++ + HR    SP R
Sbjct: 8   HIGVWFGLEEAERPMRASCSLSMIHHPQLTAVRSSKSSENLHRITTMSPQR 58


>Z68751-3|CAA92973.1|  760|Caenorhabditis elegans Hypothetical
           protein T05E11.3 protein.
          Length = 760

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 9/40 (22%), Positives = 23/40 (57%)
 Frame = -3

Query: 356 RDAMELSEEEQIALAMQMSMQQEAPQAEESMDVSEEYAEV 237
           R ++++S++ Q+     +   +  P+A E   + EE++E+
Sbjct: 721 RQSLDVSQDAQVETEQHIEEAEPEPEAAEETTIEEEHSEL 760


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,142,058
Number of Sequences: 27780
Number of extensions: 258673
Number of successful extensions: 747
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)