Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11i16r
(694 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g38630.1 68417.m05467 26S proteasome regulatory subunit S5A (... 62 3e-10
At2g17200.1 68415.m01986 ubiquitin family protein weak similarit... 34 0.078
At2g17190.1 68415.m01985 ubiquitin family protein contains INTER... 34 0.078
At1g43690.1 68414.m05019 ubiquitin interaction motif-containing ... 30 1.3
At5g44180.1 68418.m05406 homeobox transcription factor, putative... 28 5.1
At5g22610.1 68418.m02642 F-box family protein contains F-box dom... 28 5.1
At5g51520.1 68418.m06389 invertase/pectin methylesterase inhibit... 28 6.8
At1g28420.1 68414.m03494 homeobox transcription factor, putative... 28 6.8
At5g62360.1 68418.m07827 invertase/pectin methylesterase inhibit... 27 8.9
At3g44320.1 68416.m04760 nitrilase 3 (NIT3) identical to SP|P460... 27 8.9
At3g27610.1 68416.m03449 expressed protein 27 8.9
At3g05660.1 68416.m00630 disease resistance family protein conta... 27 8.9
>At4g38630.1 68417.m05467 26S proteasome regulatory subunit S5A
(RPN10) identical to multiubiquitin chain binding
protein (MBP1) SP:P55034, GI:1165206
Length = 386
Score = 62.5 bits (145), Expect = 3e-10
Identities = 56/199 (28%), Positives = 88/199 (44%), Gaps = 26/199 (13%)
Frame = -3
Query: 662 GSHLVSVPAGGC----VVLSEALITSXXXXXXXXXXXXXXXXP---FEFGVDPNVDPELA 504
GSH+V VP+G V+LS + T F+FGVDPN+DPELA
Sbjct: 168 GSHIVHVPSGANALSDVLLSTPVFTGDEGASGYVSAAAAAAAAGGDFDFGVDPNIDPELA 227
Query: 503 LALRVSMXXXXXXXXXXXXXXXXXXXXXXXXXXXGSDTAVERAIAMSLGRDAMELSEEEQ 324
LALRVSM S A + +A + ++A + E+
Sbjct: 228 LALRVSMEEERARQEAAAKKAADEAGQKDKDGDTAS--ASQETVARTTDKNAEPMDEDSA 285
Query: 323 I---ALAMQMSMQQEAPQAEESMDVS---------EEYAE-------VMNDPAFLQSVLE 201
+ A+AM + + A+E D++ EE +E ++ + AF+ SVL
Sbjct: 286 LLDQAIAMSVGDVNMSEAADEDQDLALALQMSMSGEESSEATGAGNNLLGNQAFISSVLS 345
Query: 200 NLPGVDPQSEAIRNAMSTI 144
+LPGVDP A++ ++++
Sbjct: 346 SLPGVDPNDPAVKELLASL 364
>At2g17200.1 68415.m01986 ubiquitin family protein weak similarity
to PLIC-2 (ubiquitin-like type II) [Homo sapiens]
GI:9937505; contains Pfam profiles PF00240: Ubiquitin
family, PF00627: UBA/TS-N domain
Length = 551
Score = 34.3 bits (75), Expect = 0.078
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = -3
Query: 302 SMQQEAPQAEESMDVSEEYAEVMNDPAFLQSVLENLPGVDPQSEAIRN---AMSTI 144
SM PQ E +D + E V+NDP+ L+ LE + E +RN AMS I
Sbjct: 192 SMIMNNPQMRELVDRNPELGHVLNDPSILRQTLEAARNPELMREMMRNTDRAMSNI 247
>At2g17190.1 68415.m01985 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 538
Score = 34.3 bits (75), Expect = 0.078
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = -3
Query: 302 SMQQEAPQAEESMDVSEEYAEVMNDPAFLQSVLENLPGVDPQSEAIRN---AMSTI 144
SM PQ E +D + E V+NDP+ L+ LE + E +RN AMS I
Sbjct: 187 SMIMNNPQMRELVDRNPELGHVLNDPSILRQTLEAARNPELMREMMRNTDRAMSNI 242
>At1g43690.1 68414.m05019 ubiquitin interaction motif-containing
protein contains Pfam profile PF02809: Ubiquitin
interaction motif
Length = 599
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -3
Query: 335 EEEQIALAMQMSMQQEAPQAEESMDVSEE 249
E+E + LA++MSMQ P+ + S + EE
Sbjct: 6 EDEDLKLALKMSMQYNPPEPKRSKPIEEE 34
>At5g44180.1 68418.m05406 homeobox transcription factor, putative
similar to homeobox transcription factor Hox7/homeotic
protein Hox7 (GI:19486) {Lycopersicon peruvianum};
similar to GP|4165087| Williams-Beuren syndrome deletion
transcript 9 [Homo sapiens]; contains Pfam PF02791: DDT
domain and Pfam PF00046: Homeobox domain
Length = 1694
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = -3
Query: 389 AVERAIAMSLGRDAMELSEEEQIALAMQMSMQQEAP 282
A ERAIA + +++MEL E+E++ L ++ + P
Sbjct: 436 ANERAIARKIAKESMELIEDERLELMEVAALTKGLP 471
>At5g22610.1 68418.m02642 F-box family protein contains F-box domain
Pfam:PF00646
Length = 472
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -2
Query: 504 ISSTCVDGRTKATSRRRVSS 445
+ +TC+ RTKAT RRVSS
Sbjct: 341 LETTCIVDRTKATVERRVSS 360
>At5g51520.1 68418.m06389 invertase/pectin methylesterase inhibitor
family protein low similarity to pectinesterase from
Lycopersicon esculentum SP|Q43143, Arabidopsis thaliana
SP|Q42534; contains Pfam profile PF04043: Plant
invertase/pectin methylesterase inhibitor
Length = 204
Score = 27.9 bits (59), Expect = 6.8
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +3
Query: 543 ERRQTRARRACSITTYQRTCYQSLRKHNT 629
+ +T + AC+ TTY CY+SL +++
Sbjct: 32 QNHKTFVKTACNSTTYPDKCYKSLSSYSS 60
>At1g28420.1 68414.m03494 homeobox transcription factor, putative
similar to homeobox transcription factor Hox7 GI:19486
[Lycopersicon peruvianum]
Length = 1703
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/54 (25%), Positives = 29/54 (53%)
Frame = -3
Query: 389 AVERAIAMSLGRDAMELSEEEQIALAMQMSMQQEAPQAEESMDVSEEYAEVMND 228
A+E+A A + +++M+L E+EQ+ L ++ + P + + + EV D
Sbjct: 469 AIEKATARRIAKESMDLIEDEQLELMELAAISKGLPSVLQLDHDTLQNLEVYRD 522
>At5g62360.1 68418.m07827 invertase/pectin methylesterase inhibitor
family protein similar to pectinesterase from Arabidosis
thaliana SP|Q42534, Lycopersicon esculentum SP|Q43143;
contains Pfam profile PF04043: Plant invertase/pectin
methylesterase inhibitor
Length = 203
Score = 27.5 bits (58), Expect = 8.9
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 564 RRACSITTYQRTCYQSLRKH 623
+ +C+ TTY R C+ SL H
Sbjct: 45 KSSCTFTTYPRLCFSSLSTH 64
>At3g44320.1 68416.m04760 nitrilase 3 (NIT3) identical to SP|P46010
Nitrilase 3 (EC 3.5.5.1) {Arabidopsis thaliana}
Length = 346
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +3
Query: 261 IHALFSLGCFLLHAHLHCKR 320
IH GCF+L AH CKR
Sbjct: 222 IHIAVEGGCFVLSAHQFCKR 241
>At3g27610.1 68416.m03449 expressed protein
Length = 389
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/63 (25%), Positives = 34/63 (53%)
Frame = -3
Query: 383 ERAIAMSLGRDAMELSEEEQIALAMQMSMQQEAPQAEESMDVSEEYAEVMNDPAFLQSVL 204
E ++ ++ G+ + E EE+++A ++ + +A Q E++D +EV+N+ S
Sbjct: 128 ETSVTLTKGKRSRE--EEDKVASSVLIQAMAKACQVSETLDSGLTDSEVLNESVIQFSEE 185
Query: 203 ENL 195
E L
Sbjct: 186 EEL 188
>At3g05660.1 68416.m00630 disease resistance family protein contains
leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon
pimpinellifolium] gi|1184077|gb|AAC15780
Length = 883
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +3
Query: 279 LGCFLLHAHLHCKRNLLLFREFHCITT 359
L C LH H NL + + FH +TT
Sbjct: 89 LMCSCLHGWFHSNSNLSMLQNFHFLTT 115
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,450,086
Number of Sequences: 28952
Number of extensions: 241013
Number of successful extensions: 688
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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