Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11i16f
         (576 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit Rpn10|...   161   7e-41
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    28   0.85 
SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein] reductase|Schiz...    28   0.85 
SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|...    27   2.0  
SPCC61.02 |spt3||histone acetyltransferase complex subunit Spt3|...    27   2.6  
SPAPB2B4.01c |gpi12||pig-L|Schizosaccharomyces pombe|chr 1|||Manual    25   6.0  
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   7.9  
SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    25   7.9  

>SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit
           Rpn10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 243

 Score =  161 bits (391), Expect = 7e-41
 Identities = 77/166 (46%), Positives = 112/166 (67%), Gaps = 2/166 (1%)
 Frame = +3

Query: 72  MVLESTMICVDNSDYMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLTLAN--VE 245
           MVLE+TMI +DNS++M NGD++PTR +AQ+D V+++ + K   NPEN  GL+T+ +   +
Sbjct: 1   MVLEATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQ 60

Query: 246 VLATLTSDVGRIMSKLHRVQPNGDINLLTGIRIAHLALKHRQGKNHKMRIVVFVGSPVNT 425
           VL+TLT D G+ +S +H +   G+     GI+IA LALKHR+ K  + RIV FVGSP+  
Sbjct: 61  VLSTLTRDYGKFLSAMHDLPVRGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPIVE 120

Query: 426 DEKELVKLAKRLKKEKVNCDVVSFGEDSENNPLLTTFVNTLNGKDT 563
           DEK L++LAKR+KK  V  D++  GE  +N   L  F++  N  D+
Sbjct: 121 DEKNLIRLAKRMKKNNVAIDIIHIGE-LQNESALQHFIDAANSSDS 165


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 28.3 bits (60), Expect = 0.85
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +3

Query: 132 FLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLTLANVEVLATLTSDVGRIMSKLH 296
           F P+RL   +  V L   S +  + EN++ +  L N  +L  +   + R + KLH
Sbjct: 664 FDPSRLLIFKGVVKLKASSYSNGDTENDIHMFLLDNFLLLCKIKIQMKRRVHKLH 718


>SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein]
           reductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 28.3 bits (60), Expect = 0.85
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 474 VNCDVVSFGEDSENNPLLTTFVNTLNG 554
           VN ++VS  ED++    L TF+N + G
Sbjct: 336 VNTELVSLKEDADEKTFLDTFLNAIEG 362


>SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 13/48 (27%), Positives = 27/48 (56%)
 Frame = +3

Query: 408 GSPVNTDEKELVKLAKRLKKEKVNCDVVSFGEDSENNPLLTTFVNTLN 551
           GS ++ DE       +  +++  N D+++F    +N PLLT  +++L+
Sbjct: 4   GSKLSEDETFSQTFNEEEQEDSRNKDILAFDPSVDNEPLLTKKLSSLS 51


>SPCC61.02 |spt3||histone acetyltransferase complex subunit
           Spt3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 307

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 192 TRSNPENN-VGLLTLANVEVLATLTSDVGRIMSKLHRVQ 305
           T + P+N+ V +L     E++ATLT +   +  ++ R+Q
Sbjct: 202 TDTRPDNDIVDILGFLTFEIVATLTEEALAVKDRMDRIQ 240


>SPAPB2B4.01c |gpi12||pig-L|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
 Frame = +3

Query: 372 GKNHKMRIVVFVGSPVNTD------EKELVKLAKRLKKEKVNCDVVS 494
           G  H  R+ V   S  N D      EKELV  A + + +K N  VVS
Sbjct: 56  GNQHSTRVHVLCLSNGNADGLGSVREKELVVAASKYQIDKTNVHVVS 102


>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 233

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +3

Query: 351 LALKHRQGKNHKMRIVVFVGSPVNTDEKELVKL 449
           L  K ++GKN+  ++++FVG+       E ++L
Sbjct: 78  LKSKRQKGKNNDRKVILFVGNLPKDSSVETLQL 110


>SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 407

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 209 LRIGSCFGMTYQINSILLSLQSCRQEISISHVVTIV 102
           +R  +     YQ+  ILLS     QE  +SHV  I+
Sbjct: 285 IRFNTLLYYRYQLQEILLSYNHYPQESDMSHVHQIL 320


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,334,327
Number of Sequences: 5004
Number of extensions: 45459
Number of successful extensions: 139
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)