Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11i16f
         (576 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0240 - 2506901-2507008,2507950-2508322,2508418-2508612,250...   147   6e-36
01_07_0154 - 41532220-41533252,41533786-41533971,41534759-415350...    27   8.1  

>10_01_0240 -
           2506901-2507008,2507950-2508322,2508418-2508612,
           2508771-2508885,2510027-2510132,2510253-2510366,
           2510521-2510538
          Length = 342

 Score =  147 bits (356), Expect = 6e-36
 Identities = 78/150 (52%), Positives = 102/150 (68%), Gaps = 2/150 (1%)
 Frame = +3

Query: 78  LESTMICVDNSDYMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLTLA--NVEVL 251
           LE+T+ICVD+S++MRNGD+ PTRLQAQ+DA NLV  +K  SNPEN VG+L +A   V VL
Sbjct: 5   LEATVICVDDSEWMRNGDYPPTRLQAQEDAANLVVGTKMTSNPENTVGVLAMAGDRVRVL 64

Query: 252 ATLTSDVGRIMSKLHRVQPNGDINLLTGIRIAHLALKHRQGKNHKMRIVVFVGSPVNTDE 431
              TSD  + ++ +H ++ +G+ NL   + IA L LK+R  K    RIVVFVGSPV  DE
Sbjct: 65  LAPTSDPVKFLACMHGLEASGEANLTATLNIAELVLKNRPDKRLSQRIVVFVGSPVK-DE 123

Query: 432 KELVKLAKRLKKEKVNCDVVSFGEDSENNP 521
           K L  + K+LKK  V+ DVV FGE  +  P
Sbjct: 124 K-LETIGKKLKKYNVSLDVVEFGESDDEKP 152


>01_07_0154 -
           41532220-41533252,41533786-41533971,41534759-41535039,
           41535184-41535318,41535427-41535573,41535841-41536010,
           41536110-41536197,41536999-41537219,41537725-41537810,
           41537916-41537962
          Length = 797

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
 Frame = +3

Query: 51  VC*KNTKMVLESTM--ICVDNSDYMRNGDFLPTRLQAQQ 161
           +C ++  + L S++  I  D+S Y  NG+FLP + +A++
Sbjct: 331 ICYESEILELASSLGVIMKDDSGYWINGEFLPNKAEAEK 369


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,624,820
Number of Sequences: 37544
Number of extensions: 279486
Number of successful extensions: 552
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)