Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11i16f
         (576 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2929| Best HMM Match : No HMM Matches (HMM E-Value=.)              243   7e-65
SB_16678| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.22 
SB_31762| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_58067| Best HMM Match : TPR_2 (HMM E-Value=0)                       28   6.3  
SB_32327| Best HMM Match : ig (HMM E-Value=7.9e-23)                    27   8.3  
SB_28072| Best HMM Match : VWA (HMM E-Value=0)                         27   8.3  

>SB_2929| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 385

 Score =  243 bits (595), Expect = 7e-65
 Identities = 108/148 (72%), Positives = 130/148 (87%)
 Frame = +3

Query: 117 MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLTLANVEVLATLTSDVGRIMSKLH 296
           MRNGDFLPTR+QAQQDAV+L+CHSKTR NPENNVGL+T A++EVL TLT+DVG++++ LH
Sbjct: 1   MRNGDFLPTRIQAQQDAVSLICHSKTRQNPENNVGLMTTASLEVLVTLTTDVGKLLTTLH 60

Query: 297 RVQPNGDINLLTGIRIAHLALKHRQGKNHKMRIVVFVGSPVNTDEKELVKLAKRLKKEKV 476
           +VQP GD+N LT ++ AHL LKHRQGKNHKMRIVVFVGSP+ +DEKE+VKLAK+LKKEKV
Sbjct: 61  KVQPQGDVNFLTAVKKAHLVLKHRQGKNHKMRIVVFVGSPIESDEKEIVKLAKKLKKEKV 120

Query: 477 NCDVVSFGEDSENNPLLTTFVNTLNGKD 560
           N DVV+FGE+  N   LT F+N LNGKD
Sbjct: 121 NVDVVNFGEEESNTEKLTAFINILNGKD 148


>SB_16678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 298

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +3

Query: 84  STMICVDNSDYMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPEN 212
           S M+  DN  ++ N DF   ++   ++ +N V  S   + PEN
Sbjct: 74  SVMVSHDNERFVDNNDFTSRKMLTAEEMINAVFESNLNNRPEN 116


>SB_31762| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1038

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
 Frame = +3

Query: 93  ICVDNSDYMRNGDFLPTRLQAQQDAVNLVCHSK---TRSNPENNVGLLT--LANVEVLAT 257
           +C+ ++DYM  G      +   ++A+ +   ++    + +   N+G L   L N E    
Sbjct: 714 VCIGDTDYM--GGNYKEAISHYKEALKMFQTARDEQAQGDAHFNIGNLNCKLGNYEEAIV 771

Query: 258 LTSDVGRIMSKLHRVQPNGDINLLTG 335
             +D  R+  K+H  Q  GD +L  G
Sbjct: 772 NLTDALRLFEKIHNDQGQGDAHLSIG 797



 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +3

Query: 213 NVGLLT--LANVEVLATLTSDVGRIMSKLHRVQPNGDINLLTG 335
           N+G+L   L N E      +D  R+  K+H  Q  GD +L  G
Sbjct: 835 NIGILNCKLGNYEEAIVNLTDALRLFEKIHNDQEQGDAHLSIG 877


>SB_58067| Best HMM Match : TPR_2 (HMM E-Value=0)
          Length = 593

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
 Frame = +3

Query: 93  ICVDNSDYMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPEN---NVGLL--TLANVEVLAT 257
           +C+ ++DYM  G      +   ++A+ +   ++      +   N+G L   L N E    
Sbjct: 415 VCIGDTDYM--GGNYKEAISHYKEALKMFQTARDEQEQGDAHFNIGNLHCKLGNYEEAIV 472

Query: 258 LTSDVGRIMSKLHRVQPNGDINLLTG 335
             +D  R+  K+H  Q  GD +L  G
Sbjct: 473 NLTDALRLFEKIHNDQGQGDAHLSIG 498


>SB_32327| Best HMM Match : ig (HMM E-Value=7.9e-23)
          Length = 932

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = +3

Query: 402 FVGSPVNTDEKELVKLAKRLKKEKVNCDVVSFGEDSENNPLLTTFVNT 545
           F G     D+ ELV  + R + E + C  V F   S NN +LTT   T
Sbjct: 357 FKGLVSVVDQSELVIHSVRPEDESMFCCEVHFTATSANNCVLTTVSGT 404


>SB_28072| Best HMM Match : VWA (HMM E-Value=0)
          Length = 2979

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 35/155 (22%), Positives = 66/155 (42%), Gaps = 5/155 (3%)
 Frame = +3

Query: 90   MICVDNSDYMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLTL-ANVEVLATLTS 266
            +  VDNSD++ N +F     ++Q D +  +      S     VG++T   N +++    S
Sbjct: 2813 LFLVDNSDFVTNEEF-----ESQLDFIKSIARKMHISPEGTRVGMITYNFNPKLIVDFES 2867

Query: 267  --DVGRIMSKLHRVQPN-GDINLLTGIRIAHLALKHRQGKNHKMRIVVFVGSPV-NTDEK 434
                 ++ S+L  +    G   L   I +A     + +    K+ +V   G  + +   +
Sbjct: 2868 YNTAEKLFSRLDELPKGLGSRRLDLAIDLARNVFANSRQNAAKVMVVFAKGRQLTDPSSR 2927

Query: 435  ELVKLAKRLKKEKVNCDVVSFGEDSENNPLLTTFV 539
             L ++ K L +  V    V  G+D+ N   LT+ V
Sbjct: 2928 SLSEVIKPLVRLDVVTLAVGIGQDA-NIQQLTSIV 2961


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,536,139
Number of Sequences: 59808
Number of extensions: 337555
Number of successful extensions: 705
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)