Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11i15r
(457 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit Rsm2... 26 3.1
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 26 3.1
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 25 4.2
SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz... 25 7.3
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb... 24 9.6
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu... 24 9.6
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 24 9.6
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 24 9.6
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 24 9.6
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa... 24 9.6
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 24 9.6
>SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit
Rsm25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 220
Score = 25.8 bits (54), Expect = 3.1
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +3
Query: 54 GKR-RSAQYCPQEQTPTRTRLWRRGPPESPWHWSRP 158
GKR R + Y PQE +L +R + PW +RP
Sbjct: 57 GKRLRKSMYQPQEIQWPEDKLRKRFYRDHPWELARP 92
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 25.8 bits (54), Expect = 3.1
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +2
Query: 182 QHVSGDSTVNGSVTLDAGILIDGPDLDVTELLR 280
QH+SG S G +TLD+ +L D + VTE R
Sbjct: 190 QHISGTSPSPGFITLDS-LLSDVNRMIVTEQAR 221
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 25.4 bits (53), Expect = 4.2
Identities = 10/39 (25%), Positives = 19/39 (48%)
Frame = -1
Query: 340 GDNQVVWAAGWGATSLGGSNSEQLRHVQVWTINQNACVQ 224
G + VWA + S ++ R +++W ++ CVQ
Sbjct: 505 GHRRGVWACSFNPFSRQLASGSGDRTIRIWNVDTQQCVQ 543
>SPAC637.07 |moe1||translation initiation factor eIF3d
Moe1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 567
Score = 24.6 bits (51), Expect = 7.3
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -1
Query: 334 NQVVWAAGWGATSLGGSNSEQLRHVQVWTINQNACVQRYR 215
N+ + + A + G NS V+ INQN CVQ R
Sbjct: 307 NENAYDSPMDADNREGVNSPGALSVEATYINQNFCVQALR 346
>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 394
Score = 24.2 bits (50), Expect = 9.6
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -3
Query: 257 GLDHQSECLRPTLQTH*PC 201
G +H +CL P+ +T PC
Sbjct: 353 GSEHDMQCLPPSYETMGPC 371
>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 24.2 bits (50), Expect = 9.6
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -1
Query: 418 ILRSNSNIAYNNNVRPINIAGANYNL 341
+ RS I YNNN I A A ++L
Sbjct: 228 VYRSGYQILYNNNTDSIAAAAATHDL 253
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 24.2 bits (50), Expect = 9.6
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = +2
Query: 179 AQHVSGDS--TVNGSVTLDAGILIDGPDLDVTEL 274
A+ GDS + TLD+G++IDG + +EL
Sbjct: 189 AKRHEGDSIKSTEHDSTLDSGVVIDGREKSSSEL 222
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 24.2 bits (50), Expect = 9.6
Identities = 9/21 (42%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Frame = +3
Query: 282 LDPPSDVAPQPAAQ-TTWLSP 341
+DPP + P PAA+ W+ P
Sbjct: 129 VDPPDVIKPNPAAKYECWIDP 149
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 24.2 bits (50), Expect = 9.6
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +1
Query: 94 HQRGRGCGGEDHRSHPGTGRDHRRPKHQS 180
H RG CGG + P + R K++S
Sbjct: 584 HPRGYKCGGNERNLTPEATSEIEREKNES 612
>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 639
Score = 24.2 bits (50), Expect = 9.6
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -1
Query: 370 INIAGANYNLGDNQVVW 320
IN +G NY +GDN W
Sbjct: 159 INESGINYKIGDNGSRW 175
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 24.2 bits (50), Expect = 9.6
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +1
Query: 391 KLCWNYCVRCRGH 429
K+ WNYCV GH
Sbjct: 1485 KIDWNYCVLDEGH 1497
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,950,939
Number of Sequences: 5004
Number of extensions: 40150
Number of successful extensions: 112
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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