Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11i15r
         (457 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    61   5e-12
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   1.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   1.6  
S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor prot...    22   3.6  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   6.3  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         21   8.4  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   8.4  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 61.3 bits (142), Expect = 5e-12
 Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 7/150 (4%)
 Frame = -1

Query: 430 SDLCILRSNSNIAYNNNVRPINIAGANY-NLGDNQVVWAAGWGATSLGGSNSEQLRHVQV 254
           +D+ +L++  +I + + V P  +   ++ +      V   GWG TS  G  S  L+   +
Sbjct: 256 NDIALLKTEKDIKFGDKVGPACLPFQHFLDSFAGSDVTVLGWGHTSFNGMLSHILQKTTL 315

Query: 253 WTINQNACVQRYRPINRAITANMLCSGVLDVGGRDQCQGDSGGPLLHNR------VLVGV 92
             + Q  C + Y  I      N +C+      G+D CQ DSGGP+L         V +G+
Sbjct: 316 NMLTQVECYKYYGNI----MVNAMCAYAK---GKDACQMDSGGPVLWQNPRTKRLVNIGI 368

Query: 91  CSWGQYCADRRFPGVNVRVSRFTSWIQSNS 2
            SWG  C   ++P  N +V  +  WI S +
Sbjct: 369 ISWGAECG--KYPNGNTKVGSYIDWIVSQT 396


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 61  DGQRSTVPKSRHQRGRGCGGEDHRSHPGTGRDH 159
           D + S +P  R++ G   G     S PGTGR+H
Sbjct: 374 DLRMSPLPSIRNRSGLVSGS----STPGTGREH 402


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 314 SSPNNLVITKIVIGTSNINRTNVVVISYVGITA*DAEVTVSSTSV 448
           ++  ++V+T +   T+ IN     VIS  G T     +  SSTS+
Sbjct: 825 TTEQSVVVTNV---TTTINTPTTSVISMSGTTVPITSLPASSTSI 866


>S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor
           protein.
          Length = 85

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = +2

Query: 311 TSSPNNLVITKIVIGTSNINRTNVVVISY 397
           +S+  N ++  +++GT  I  + +++ISY
Sbjct: 2   SSTEANELVMSVIVGTVVIVSSLIILISY 30


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -1

Query: 409 SNSNIAYNNNVRPINIAGANYN 344
           SN  I  NNN    N    NYN
Sbjct: 86  SNKTIHNNNNYNNNNYNNYNYN 107


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -1

Query: 124 PLLHNRVLVGVCSW 83
           PL H RV   V SW
Sbjct: 56  PLRHRRVTCDVLSW 69


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 73  STVPKSRHQRGRGCGG 120
           S+   +RHQR  GC G
Sbjct: 392 SSPDSARHQRIGGCNG 407


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,648
Number of Sequences: 438
Number of extensions: 3247
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12066642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)