Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11i15r
(457 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g05030.1 68415.m00525 hypothetical protein 32 0.16
At2g36250.2 68415.m04450 chloroplast division protein FtsZ (FtsZ... 29 1.1
At2g36250.1 68415.m04449 chloroplast division protein FtsZ (FtsZ... 29 1.1
At5g47140.1 68418.m05811 zinc finger (GATA type) family protein ... 29 2.0
At5g03360.1 68418.m00289 DC1 domain-containing protein contains ... 29 2.0
At4g17570.1 68417.m02627 zinc finger (GATA type) family protein 29 2.0
At3g56170.1 68416.m06243 Ca(2+)-dependent nuclease identical to ... 28 3.4
At3g18080.1 68416.m02299 glycosyl hydrolase family 1 protein con... 28 3.4
At2g17240.1 68415.m01991 expressed protein 28 3.4
At1g31290.1 68414.m03829 PAZ domain-containing protein / piwi do... 28 3.4
At5g67300.1 68418.m08486 myb family transcription factor contain... 27 4.5
At5g01280.1 68418.m00037 expressed protein 27 4.5
At3g24506.1 68416.m03075 expressed protein 27 4.5
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 27 6.0
At5g20200.1 68418.m02406 nucleoporin-related contains weak simil... 27 6.0
At5g52400.1 68418.m06501 cytochrome P450 family protein similar ... 27 7.9
At4g19865.1 68417.m02911 kelch repeat-containing F-box family pr... 27 7.9
At3g60080.1 68416.m06709 zinc finger (C3HC4-type RING finger) fa... 27 7.9
At2g40410.2 68415.m04984 Ca(2+)-dependent nuclease, putative sim... 27 7.9
At1g65430.1 68414.m07423 zinc finger protein-related contains we... 27 7.9
At1g55580.1 68414.m06361 scarecrow transcription factor family p... 27 7.9
>At2g05030.1 68415.m00525 hypothetical protein
Length = 205
Score = 32.3 bits (70), Expect = 0.16
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +1
Query: 58 SDGQRSTVPKSRHQRGRGCGGEDHRSHPGTGRDHRRPKHQS 180
S G+RS +P+S G +DHR G +DHRR + Q+
Sbjct: 65 SSGERS-LPRSSTSTDDRVGYQDHRRDQGQDQDHRRDQQQN 104
>At2g36250.2 68415.m04450 chloroplast division protein FtsZ
(FtsZ2-1) identical to chloroplast division protein
AtFtsZ2-1 [Arabidopsis thaliana] GI:15636809, plastid
division protein FtsZ [Arabidopsis thaliana] GI:14195704
Length = 478
Score = 29.5 bits (63), Expect = 1.1
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Frame = -1
Query: 361 AGANYNLGDNQVVWAAGWGATSLGGSNSEQLRHVQVWTINQNACVQRYRPI---NRAITA 191
A +NYN +V+ G G+ ++ ++ V+ W +N + R P+ NR
Sbjct: 112 APSNYNEARIKVIGVGGGGSNAVNRMIESEMSGVEFWIVNTDIQAMRMSPVLPDNRLQIG 171
Query: 190 NMLCSGVLDVGGRDQ 146
L G L GG +
Sbjct: 172 KELTRG-LGAGGNPE 185
>At2g36250.1 68415.m04449 chloroplast division protein FtsZ
(FtsZ2-1) identical to chloroplast division protein
AtFtsZ2-1 [Arabidopsis thaliana] GI:15636809, plastid
division protein FtsZ [Arabidopsis thaliana] GI:14195704
Length = 478
Score = 29.5 bits (63), Expect = 1.1
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Frame = -1
Query: 361 AGANYNLGDNQVVWAAGWGATSLGGSNSEQLRHVQVWTINQNACVQRYRPI---NRAITA 191
A +NYN +V+ G G+ ++ ++ V+ W +N + R P+ NR
Sbjct: 112 APSNYNEARIKVIGVGGGGSNAVNRMIESEMSGVEFWIVNTDIQAMRMSPVLPDNRLQIG 171
Query: 190 NMLCSGVLDVGGRDQ 146
L G L GG +
Sbjct: 172 KELTRG-LGAGGNPE 185
>At5g47140.1 68418.m05811 zinc finger (GATA type) family protein
contains Pfam:PF00320 GATA zinc finger domain
Length = 470
Score = 28.7 bits (61), Expect = 2.0
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +3
Query: 54 GKRRSAQYCPQEQTPTRTRLWRRGPPESP 140
GK+ +C TP LWR GPPE P
Sbjct: 2 GKQGPCYHCGVTSTP----LWRNGPPEKP 26
>At5g03360.1 68418.m00289 DC1 domain-containing protein contains Pfam
profile PF03107: DC1 domain
Length = 1610
Score = 28.7 bits (61), Expect = 2.0
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 94 HQRGRGCGGEDHRSHPGTGRDHRRPKH 174
H R RGC GE+H+ + D + P H
Sbjct: 1223 HFRCRGCNGENHKGYEQAPVDVKHPLH 1249
>At4g17570.1 68417.m02627 zinc finger (GATA type) family protein
Length = 510
Score = 28.7 bits (61), Expect = 2.0
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +3
Query: 54 GKRRSAQYCPQEQTPTRTRLWRRGPPESP 140
GK+ +C TP LWR GPPE P
Sbjct: 2 GKQGPCYHCGVTNTP----LWRNGPPEKP 26
>At3g56170.1 68416.m06243 Ca(2+)-dependent nuclease identical to
Ca(2+)-dependent nuclease [Arabidopsis thaliana]
GI:7684292; supporting cDNA gi|7684291|dbj|D84226.1|
Length = 323
Score = 27.9 bits (59), Expect = 3.4
Identities = 11/33 (33%), Positives = 12/33 (36%)
Frame = +3
Query: 57 KRRSAQYCPQEQTPTRTRLWRRGPPESPWHWSR 155
KR E R LW PE PW W +
Sbjct: 285 KRAELAKWENEARQKRVGLWASSNPEKPWEWRK 317
>At3g18080.1 68416.m02299 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to beta-glucosidase BGQ60 precursor GB:A57512
[Hordeum vulgare]; similar to beta-mannosidase enzyme
(GI:17226270) [Lycopersicon esculentum]
Length = 512
Score = 27.9 bits (59), Expect = 3.4
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +1
Query: 304 HPNQQPKQLGYHQDCN 351
HP +PK LGY QD N
Sbjct: 356 HPTTKPKDLGYQQDWN 371
>At2g17240.1 68415.m01991 expressed protein
Length = 140
Score = 27.9 bits (59), Expect = 3.4
Identities = 12/41 (29%), Positives = 17/41 (41%)
Frame = +3
Query: 57 KRRSAQYCPQEQTPTRTRLWRRGPPESPWHWSRPPTSKTPE 179
+R Q P +L RR P + P W RP + P+
Sbjct: 50 RRNRNQLQVVSMAPEEEKLTRRNPLDFPIEWERPKPGRRPD 90
>At1g31290.1 68414.m03829 PAZ domain-containing protein / piwi
domain-containing protein contains Pfam profiles
PF02170: PAZ domain, PF02171: Piwi domain
Length = 1194
Score = 27.9 bits (59), Expect = 3.4
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +1
Query: 13 GSKR*NGKRER*HQGSDGQRSTVPKSRHQ-RGRGCGGEDHRSHPGTGRDHRR 165
G + +G+ + +G G R R RGRG GG+ R + G G H R
Sbjct: 39 GDRGYSGRGDGHGRGGGGDRGRGYSGRGDGRGRGGGGDRGRGYSGRGDGHGR 90
>At5g67300.1 68418.m08486 myb family transcription factor contains
PFAM profile: myb DNA binding domain PF00249
Length = 305
Score = 27.5 bits (58), Expect = 4.5
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 106 RGCGGEDHRSHPGTGRDHRRPK 171
R CGG DHR + G+ DHR K
Sbjct: 105 RKCGGYDHRGYDGS-EDHRPVK 125
>At5g01280.1 68418.m00037 expressed protein
Length = 460
Score = 27.5 bits (58), Expect = 4.5
Identities = 15/43 (34%), Positives = 18/43 (41%)
Frame = +3
Query: 39 RTLTPGKRRSAQYCPQEQTPTRTRLWRRGPPESPWHWSRPPTS 167
++ TP KR S T TR L S WSRP +S
Sbjct: 103 KSKTPAKRPSTPTSRATSTTTRATLTSSSTTSSTRSWSRPSSS 145
>At3g24506.1 68416.m03075 expressed protein
Length = 149
Score = 27.5 bits (58), Expect = 4.5
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +3
Query: 96 PTRTRLWRRGPPESPWHWSRPPTSKTPE 179
P +L RR P + P W RP + P+
Sbjct: 71 PEEEKLTRRNPLDFPIEWERPKPGRRPD 98
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 27.1 bits (57), Expect = 6.0
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Frame = -1
Query: 397 IAYNNNVRPINIAGANYNLGDNQVVWAAGWG---ATSLGG 287
+A NNN N G N+ G+N+ WG A +GG
Sbjct: 350 VANNNNNNNNNAIGGNFQGGENRGFGRGNWGRGNAQGMGG 389
>At5g20200.1 68418.m02406 nucleoporin-related contains weak
similarity to Nucleoporin NUP1 (Nuclear pore protein
NUP1) (Swiss-Prot:P20676) [Saccharomyces cerevisiae]
Length = 762
Score = 27.1 bits (57), Expect = 6.0
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 23 GETGNANVNTREATVSAVLSPRADTNEDAVVEE 121
G +G ANVN ++SA +A N+D + E
Sbjct: 128 GPSGTANVNEGNFSISAQRRGKAALNDDVAISE 160
>At5g52400.1 68418.m06501 cytochrome P450 family protein similar to
Cytochrome P450 72A1 (SP:Q05047) (cytochrome P450 lxxii
hydroxylase) (ge10h) [Catharanthus roseus]
Length = 519
Score = 26.6 bits (56), Expect = 7.9
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = -1
Query: 253 WTINQNACVQRYRPINRAITANMLCSGVLDVGGRDQCQGDSGGP 122
WT +++ + P+N + NM+ V ++ R Q +SG P
Sbjct: 161 WTRHRHIITPAFAPLNLKVMTNMMVESVSNMLDRWGIQINSGNP 204
>At4g19865.1 68417.m02911 kelch repeat-containing F-box family
protein contains F-box domain Pfam:PF00646 and Kelch
motif Pfam:PF01344
Length = 393
Score = 26.6 bits (56), Expect = 7.9
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +3
Query: 84 QEQTPTRTRLWRRGPPESPWHWSRPPTSKTPEHNMLAVIARLMGL 218
Q + P + + PP SP S P S PE ++ +AR+ L
Sbjct: 4 QVEPPEKKKTKNSSPPHSPPSSSSPSLSLLPEEIVVHCLARISRL 48
>At3g60080.1 68416.m06709 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 306
Score = 26.6 bits (56), Expect = 7.9
Identities = 13/57 (22%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +2
Query: 182 QHVSGDST--VNGSVTLDAGILIDGPDLDVTELLRIRPSERCSTPTSSPNNLVITKI 346
+H++ D++ + S + + L+ D+D ++I S CST S P+++++ +
Sbjct: 115 RHLASDNSGSSSSSSSSSSSSLLKSSDIDSIPTIQISSSLLCSTDDSDPDSVLLCAV 171
>At2g40410.2 68415.m04984 Ca(2+)-dependent nuclease, putative
similar to Ca(2+)-dependent nuclease [Arabidopsis
thaliana] GI:7684292
Length = 332
Score = 26.6 bits (56), Expect = 7.9
Identities = 9/24 (37%), Positives = 11/24 (45%)
Frame = +3
Query: 84 QEQTPTRTRLWRRGPPESPWHWSR 155
+E R LW PE PW W +
Sbjct: 304 KEARQKRIGLWASSNPEKPWDWRK 327
>At1g65430.1 68414.m07423 zinc finger protein-related contains weak
similarity to zinc finger proteins and a Pfam:PF01485
IBR domain
Length = 567
Score = 26.6 bits (56), Expect = 7.9
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +1
Query: 379 RCCYKLCWN 405
RCCY CWN
Sbjct: 240 RCCYSFCWN 248
>At1g55580.1 68414.m06361 scarecrow transcription factor family
protein contains Pfam profile PF03514: GRAS family
transcription factor
Length = 445
Score = 26.6 bits (56), Expect = 7.9
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Frame = +2
Query: 254 DLDVTELLRIRP-----SERCSTPTSSPNNLVITKIVIGTSNINRT 376
DLD+++ L+ P +ER S P+S P +L IT + +NRT
Sbjct: 183 DLDISQGLQWPPLMQALAERSSNPSSPPPSLRITGCGRDVTGLNRT 228
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,709,126
Number of Sequences: 28952
Number of extensions: 239546
Number of successful extensions: 846
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 752336160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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