Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11i15f
         (513 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit Rsm2...    26   3.8  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    26   3.8  
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13...    25   5.0  
SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz...    25   8.8  
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    25   8.8  

>SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit
           Rsm25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -2

Query: 404 GKR-RSAQYCPQEQTPTRTRLWRRGPPESPWHWSRP 300
           GKR R + Y PQE      +L +R   + PW  +RP
Sbjct: 57  GKRLRKSMYQPQEIQWPEDKLRKRFYRDHPWELARP 92


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -1

Query: 276 QHVSGDSTVNGSVTLDAGILIDGPDLDVTELLR 178
           QH+SG S   G +TLD+ +L D   + VTE  R
Sbjct: 190 QHISGTSPSPGFITLDS-LLSDVNRMIVTEQAR 221


>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 777

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +1

Query: 118 GDNQVVWAAGWGATSLGGSNSEQLRHVQVWTINQNACVQ 234
           G  + VWA  +   S   ++    R +++W ++   CVQ
Sbjct: 505 GHRRGVWACSFNPFSRQLASGSGDRTIRIWNVDTQQCVQ 543


>SPAC637.07 |moe1||translation initiation factor eIF3d
           Moe1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 567

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +1

Query: 124 NQVVWAAGWGATSLGGSNSEQLRHVQVWTINQNACVQRYR 243
           N+  + +   A +  G NS     V+   INQN CVQ  R
Sbjct: 307 NENAYDSPMDADNREGVNSPGALSVEATYINQNFCVQALR 346


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -3

Query: 505 FXGAFIFELRSFFNIFTNWIGSK 437
           F    I +L  +F +FT W+G +
Sbjct: 78  FYSTIIKKLTPWFTVFTTWVGEE 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,131,578
Number of Sequences: 5004
Number of extensions: 44658
Number of successful extensions: 118
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)