Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11i15f
(513 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0106 + 14842748-14843085,14843122-14843250,14844145-148442... 32 0.31
02_04_0144 - 20177136-20177231,20177525-20178010,20178103-20178162 31 0.72
02_03_0351 + 18030656-18030823,18030963-18031113,18031214-180313... 31 0.72
12_01_0894 - 8661025-8661147,8661701-8661769,8661798-8661800 29 2.2
11_01_0058 + 438000-438230,438847-438902,440003-440117,440314-44... 29 2.2
12_01_0059 + 494876-494924,496060-496211,496344-496531,496971-49... 29 2.9
10_08_0108 + 14860469-14861032 28 3.8
08_02_0526 + 18184146-18184168,18184247-18184438,18184846-181849... 28 3.8
05_01_0570 + 5061600-5062142,5062790-5062972 28 3.8
02_04_0343 - 22166148-22166318,22166422-22166465,22166563-221666... 28 3.8
08_01_0600 - 5262573-5262773,5262850-5262952,5263050-5263180,526... 28 5.1
04_01_0450 - 5840015-5840055,5840635-5840977,5841326-5841537,584... 28 5.1
02_04_0411 + 22670418-22670499,22670708-22671045 28 5.1
03_06_0632 + 35196608-35197087,35198205-35198424,35198521-35198807 27 6.7
03_06_0519 - 34481751-34482722 27 6.7
03_05_0065 + 20450814-20452748 27 6.7
02_02_0572 + 11667455-11670783,11672026-11672419 27 6.7
02_01_0737 + 5492446-5492770,5492818-5493614 27 6.7
05_05_0172 + 22944351-22944388,22947342-22947446,22947532-229475... 27 8.8
02_03_0068 + 14711891-14712418 27 8.8
>10_08_0106 + 14842748-14843085,14843122-14843250,14844145-14844211,
14847177-14847324,14847998-14848097,14848306-14848384,
14848527-14848687,14848829-14848908,14849319-14849475,
14849575-14849723,14849909-14850076,14850426-14850719,
14851002-14851046,14851213-14851462,14851707-14851835,
14852799-14853039,14853977-14854642
Length = 1066
Score = 31.9 bits (69), Expect = 0.31
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = -3
Query: 430 NGKRER*HQGSDGQRSTVPKSRHQRGRGCGGEDHRSHPGTGRDHRR 293
+ +RER HQ + + +SR +RG G G H +H G G RR
Sbjct: 1024 SSRREREHQEAQEEPR---RSRERRGGGSDGNHHHNHGGGGGHKRR 1066
>02_04_0144 - 20177136-20177231,20177525-20178010,20178103-20178162
Length = 213
Score = 30.7 bits (66), Expect = 0.72
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = -3
Query: 403 GSDGQRSTVPKSRHQRGRGCGGEDHRSHPGTGRDHRRPKH 284
G D R +P R +RG G G E H G G H H
Sbjct: 69 GDDDMRPRLPTERWRRGGGRGEERHTGGGGGGSHHAHYAH 108
>02_03_0351 +
18030656-18030823,18030963-18031113,18031214-18031309,
18032027-18032103,18032627-18032706,18033216-18033276,
18034153-18034220,18034312-18034393,18034552-18034638,
18035009-18035086,18035336-18035455,18035554-18035730
Length = 414
Score = 30.7 bits (66), Expect = 0.72
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = -1
Query: 285 TRAQHVSGDSTVNGSVTLDAGILIDGPDLDVTELLRIRPSERCSTPTSSPNNLVI 121
TRA H SG+ST+ G++ + D PD+D L+ + P+ SP + I
Sbjct: 132 TRALHFSGNSTIEGAINWLSEHQED-PDIDEPLLVPANTITEANKPSLSPEEMKI 185
>12_01_0894 - 8661025-8661147,8661701-8661769,8661798-8661800
Length = 64
Score = 29.1 bits (62), Expect = 2.2
Identities = 10/28 (35%), Positives = 12/28 (42%)
Frame = -2
Query: 356 RTRLWRRGPPESPWHWSRPPTSKTPEHN 273
R LW PE PW W + + HN
Sbjct: 33 RQGLWAYDNPEKPWEWRKNKRKASEHHN 60
>11_01_0058 +
438000-438230,438847-438902,440003-440117,440314-440424,
442331-442518,442957-443013,443109-443268,443368-443436,
443580-443699
Length = 368
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = -2
Query: 410 TPGKRRSAQYCPQEQTPTRTRLWRRGPPESPWHWSR 303
T KR +E LW G PE PW W R
Sbjct: 320 TYDKRPEFARWEREARAANRGLWASGNPEKPWDWRR 355
>12_01_0059 +
494876-494924,496060-496211,496344-496531,496971-497027,
497123-497282,497389-497457,497712-497837,497972-498091
Length = 306
Score = 28.7 bits (61), Expect = 2.9
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = -2
Query: 347 LWRRGPPESPWHWSR 303
LW G PE PW W R
Sbjct: 279 LWASGNPEKPWDWRR 293
>10_08_0108 + 14860469-14861032
Length = 187
Score = 28.3 bits (60), Expect = 3.8
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -2
Query: 377 PQEQTPTRTRLWRRGPPESPWHWSR 303
P+ P R R WRR +PWH R
Sbjct: 23 PRTTLPLRCRRWRRRRRLAPWHGGR 47
>08_02_0526 +
18184146-18184168,18184247-18184438,18184846-18184954,
18185071-18185220,18185973-18186136,18186273-18186359,
18187083-18187137,18187911-18188333
Length = 400
Score = 28.3 bits (60), Expect = 3.8
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Frame = -2
Query: 440 QEVKRETRTLTPGKRRSAQYCPQEQTPTRTRLWRRGPPESPWHWSRPP----TSKTP 282
+EV+ R++TP R+ + TP R R PP+ S PP TS++P
Sbjct: 5 KEVRYTARSITPPADRNGTSKSKSPTPVRRSTSRSPPPKKSDSRSPPPRRRSTSRSP 61
>05_01_0570 + 5061600-5062142,5062790-5062972
Length = 241
Score = 28.3 bits (60), Expect = 3.8
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -3
Query: 391 QRSTVPKSRHQRGRGCGGEDHRSHPGTGRDHRRPKHQSTT 272
+R+T +SR GRG G R G RRP+ + TT
Sbjct: 142 RRATRARSRLSAGRGDGVGGARGRAVRGSARRRPRKEETT 181
>02_04_0343 -
22166148-22166318,22166422-22166465,22166563-22166626,
22166729-22167109,22167296-22167475,22167661-22167790,
22167844-22167946,22168060-22168093,22168216-22168300,
22168389-22168453,22168592-22168690,22168960-22169025,
22169200-22169439
Length = 553
Score = 28.3 bits (60), Expect = 3.8
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +1
Query: 118 GDNQVVWAAGWGATSLGGSNSEQLRHVQV-WTINQNACVQRYRPINRAITANMLCSGV 288
GD + AAGW A S + E+ R +Q ++ +A +R I R A M+ G+
Sbjct: 7 GDREGKSAAGWTALSTTKTTLEEKRRLQANGSVGGDAGTSGFRRIVRLFFACMVAGGI 64
>08_01_0600 -
5262573-5262773,5262850-5262952,5263050-5263180,
5263263-5263312,5265266-5265725,5266349-5266708
Length = 434
Score = 27.9 bits (59), Expect = 5.1
Identities = 9/33 (27%), Positives = 15/33 (45%)
Frame = -2
Query: 374 QEQTPTRTRLWRRGPPESPWHWSRPPTSKTPEH 276
Q+ P ++W + PP P W + P P +
Sbjct: 34 QQYAPPPPQMWGQAPPPPPQMWGQAPPPPQPAY 66
>04_01_0450 -
5840015-5840055,5840635-5840977,5841326-5841537,
5842381-5842477
Length = 230
Score = 27.9 bits (59), Expect = 5.1
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -3
Query: 436 R*NGKRER*HQGSDGQRSTVPKSRHQRGRGCGGEDHR-SHPGTG 308
R +G+R R QG D + + + G G GE+HR S G G
Sbjct: 11 RGDGRRLRSGQGGDASDTDSDEEQMWHGHGAWGEEHRDSKDGKG 54
>02_04_0411 + 22670418-22670499,22670708-22671045
Length = 139
Score = 27.9 bits (59), Expect = 5.1
Identities = 16/33 (48%), Positives = 16/33 (48%)
Frame = +1
Query: 298 GGRDQCQGDSGGPLLHNRVLVGVCSWGQYCADR 396
GG D GD GGP H R G C G Y DR
Sbjct: 96 GGGDD--GDCGGPCEHRRCEYGCCE-GGYGGDR 125
>03_06_0632 + 35196608-35197087,35198205-35198424,35198521-35198807
Length = 328
Score = 27.5 bits (58), Expect = 6.7
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 274 LCSGVLDVGGRDQCQGDSGGPLLHNRVLVGVCSWGQYCADRR 399
+C G + GG + GD+ G LL N+ + S+ Q C +RR
Sbjct: 289 ICRGCAEGGGEGKGSGDNTGYLLTNKWI----SYVQKCPERR 326
>03_06_0519 - 34481751-34482722
Length = 323
Score = 27.5 bits (58), Expect = 6.7
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = -2
Query: 410 TPGKRRSAQYCPQEQTPTRTRLWRR---GPPESPWHWSRPPTSKTP 282
TPG +A P +PT R R PP+ P + PPTS +P
Sbjct: 80 TPGAAAAA---PTSSSPTAARRSNRLAGAPPDPPAAVAAPPTSSSP 122
>03_05_0065 + 20450814-20452748
Length = 644
Score = 27.5 bits (58), Expect = 6.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 319 GDSGGPLLHNRVLVGVCSWGQYCADRR 399
GD+ G + +N ++ G C GQ A RR
Sbjct: 74 GDAAGVVAYNAMVAGYCRAGQLAAARR 100
>02_02_0572 + 11667455-11670783,11672026-11672419
Length = 1240
Score = 27.5 bits (58), Expect = 6.7
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Frame = -3
Query: 421 RER*HQGSDGQRSTVPKSRHQRGRGC--GGEDH-RSHPGTGRDHRRPKHQSTTC 269
R R +G D R + R R GG DH RSH G RDH R + + C
Sbjct: 149 RRRDERGRDRGRDDRGRDDGGRDRDYERGGRDHDRSH-GRDRDHGRDRDRDRAC 201
>02_01_0737 + 5492446-5492770,5492818-5493614
Length = 373
Score = 27.5 bits (58), Expect = 6.7
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = -3
Query: 349 GCGGEDHRSHPGTGRDHRRPKH-QSTTC*R**HG*WVCNVG 230
G GGE R+HP +G KH S R HG W+ G
Sbjct: 69 GGGGEVRRAHPLSGSGLTGAKHGMSFVAVRSEHGSWILGAG 109
>05_05_0172 +
22944351-22944388,22947342-22947446,22947532-22947585,
22948705-22949052,22949163-22949228,22950047-22950440
Length = 334
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +1
Query: 16 RTADSDLCILRSNSNIAYNNNV 81
RTA SDL +L SN A NN+V
Sbjct: 165 RTASSDLKVLISNRTAAVNNDV 186
>02_03_0068 + 14711891-14712418
Length = 175
Score = 27.1 bits (57), Expect = 8.8
Identities = 19/50 (38%), Positives = 25/50 (50%)
Frame = -2
Query: 437 EVKRETRTLTPGKRRSAQYCPQEQTPTRTRLWRRGPPESPWHWSRPPTSK 288
E ++E +PG+RR PQE+ R R RRG S S PPT +
Sbjct: 74 EEEKEEEEESPGRRRRNGSPPQEEA-QRRRCGRRGGAAS----SSPPTPR 118
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,866,498
Number of Sequences: 37544
Number of extensions: 355067
Number of successful extensions: 1314
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1313
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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