Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11i14r
         (724 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    42   9e-05
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac...    36   0.008
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    28   1.6  
SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3 family|Schizosa...    26   6.3  
SPBC29A3.21 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   6.3  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   8.3  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   8.3  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    25   8.3  

>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 41.9 bits (94), Expect = 9e-05
 Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
 Frame = -2

Query: 678 FYIMHGNADDNVHYQNAAKLMRALQEKD-IPFEQMSYPDEAHSLA 547
           F++ HG  DDNVH+Q++  LM  L   +   ++   +PD AHS++
Sbjct: 714 FFVAHGTGDDNVHFQHSMHLMDGLNLANCYNYDMAVFPDSAHSIS 758


>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 853

 Score = 35.5 bits (78), Expect = 0.008
 Identities = 12/27 (44%), Positives = 20/27 (74%)
 Frame = -2

Query: 672 IMHGNADDNVHYQNAAKLMRALQEKDI 592
           ++HG +DDNVH +N  +L +A+ EK +
Sbjct: 789 VLHGTSDDNVHIENTMQLTKAMVEKGV 815


>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1004

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 666  HGNADDNVHYQNAAKLMRALQEKDIPFEQMSY 571
            H NA  NV  +  AKL+  L  ++I F+++ Y
Sbjct: 965  HRNARKNVFIRKVAKLLMILNAEEIDFKRLFY 996


>SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -2

Query: 660 NADDNVHYQNAAKLMRALQEKDIPFEQMSYPDEAHSLAGVNM 535
           NA DN++Y++  K    + E    F Q  +   A S  G N+
Sbjct: 260 NALDNLNYEDREKAFSRVDELLCDFSQWPFDLHASSSVGANL 301


>SPBC29A3.21 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 100

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 294 CTRLLLELPLKHSFVNLN 241
           C R L    LKH++VNLN
Sbjct: 57  CQRFLFSSNLKHNYVNLN 74


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
           Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 20/74 (27%), Positives = 29/74 (39%)
 Frame = +3

Query: 330 LWSFYSAYNYIIVKLRHFSSSTDVTKP*MSLLKMQNSVF*LLFYKLF*NETTTYANTYSS 509
           +W  Y+  N         SSS  V  P  S L ++N ++    Y L   E+  Y++   S
Sbjct: 631 IWILYTNQNRTTTLDYQCSSSNSVVSPYASGLTLKNLIYPFEEYIL--QESNKYSSNLKS 688

Query: 510 IYP*RCTDAYSLPP 551
            Y   C      PP
Sbjct: 689 YY--GCIPNIEFPP 700


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 3227

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -2

Query: 351 MLSRTTTVLVRFGIRNMPNCTRLLLELPLKHSFVN 247
           + + TT ++  F I N P C  ++ E  L H+F++
Sbjct: 545 LFASTTNIMSTF-IHNEPTCYGIIHEKKLSHAFLD 578


>SPAC6C3.06c |||P-type ATPase, calcium
            transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/15 (80%), Positives = 12/15 (80%)
 Frame = +2

Query: 188  SVLFLTNYFTLKTLL 232
            SV FLTNYF LK LL
Sbjct: 980  SVPFLTNYFELKFLL 994


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,799,641
Number of Sequences: 5004
Number of extensions: 55666
Number of successful extensions: 102
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)