Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11i14r
         (724 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9926| Best HMM Match : DPPIV_N (HMM E-Value=0)                      51   8e-07
SB_42350| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  

>SB_9926| Best HMM Match : DPPIV_N (HMM E-Value=0)
          Length = 1066

 Score = 51.2 bits (117), Expect = 8e-07
 Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
 Frame = -2

Query: 705  LVDQLAGHDFYIMHGNADDNVHYQNAAKLMRALQEKDIPFEQMSYPDEAHSLAGVNM--H 532
            L+       + I+HG  DDNVH+QN+A++++ L  ++I +    YPD  H +   +   H
Sbjct: 787  LIKNFKDVSYLIVHGTGDDNVHFQNSAQIVKKLTLEEIDYRVQYYPDRNHGITDYHAKHH 846

Query: 531  RYNAMDRYWNRCLRM 487
             +  + R+ +  LR+
Sbjct: 847  LFKLLTRFLDTKLRL 861


>SB_42350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 414

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 22/58 (37%), Positives = 31/58 (53%)
 Frame = +1

Query: 502 IPVSIHSVVPMHIHSRQTVSFIWV*HLLKRYVLLLQRSHKLRCVLIVHIIVGVSVHDV 675
           + V IHS+  + IHS   V   W+   +K + L+  R H L  V I H +VGV VH +
Sbjct: 74  VGVRIHSLFGVRIHSLVGVQIHWLVG-VKIHSLVGVRIHSLVGVRI-HSLVGVQVHSL 129



 Score = 29.9 bits (64), Expect = 2.2
 Identities = 23/64 (35%), Positives = 34/64 (53%)
 Frame = +1

Query: 484 LHTQTPIPVSIHSVVPMHIHSRQTVSFIWV*HLLKRYVLLLQRSHKLRCVLIVHIIVGVS 663
           +H+    PV IHS+V + IHS   V  I     ++ + L+  R H L  V I H +VGV 
Sbjct: 134 IHSLVGTPVRIHSLVGVRIHSLVCVR-IHSLVGVRIHSLVGVRIHSLVGVRI-HSLVGVR 191

Query: 664 VHDV 675
           +H +
Sbjct: 192 IHSL 195



 Score = 29.9 bits (64), Expect = 2.2
 Identities = 21/64 (32%), Positives = 34/64 (53%)
 Frame = +1

Query: 484 LHTQTPIPVSIHSVVPMHIHSRQTVSFIWV*HLLKRYVLLLQRSHKLRCVLIVHIIVGVS 663
           +H+    PV IHS+V + IHS   V  I     ++ + ++  R H L  V I H++VG  
Sbjct: 224 IHSLVGTPVRIHSLVGVRIHSLVCVR-IHSLVGVRIHSIVDVRIHSLVGVRI-HLLVGAR 281

Query: 664 VHDV 675
           +H +
Sbjct: 282 IHSI 285


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,393,539
Number of Sequences: 59808
Number of extensions: 408125
Number of successful extensions: 816
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)