Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11i14f
         (603 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    23   2.6  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   6.1  
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    21   6.1  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   6.1  

>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = +1

Query: 307 ILTIQFCQLIEPTFWLLVKFNKFTGIQRQ 393
           +L +++C   +   +L   ++KFT +Q+Q
Sbjct: 529 LLVVEYCSRGDLQTYLRTAWDKFTNMQQQ 557


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 6/24 (25%), Positives = 13/24 (54%)
 Frame = +2

Query: 95  SRCGYNCIKPELLHSGGVRYRTIY 166
           ++C Y C+   +L+S    +  +Y
Sbjct: 262 NKCDYTCVNKSMLNSHMKSHSNVY 285


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 6/24 (25%), Positives = 13/24 (54%)
 Frame = +2

Query: 95  SRCGYNCIKPELLHSGGVRYRTIY 166
           ++C Y C+   +L+S    +  +Y
Sbjct: 20  NKCDYTCVNKSMLNSHMKSHSNVY 43


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 232 GSPAIVYVNSVSEIQTPVKPRCVNC 158
           GSPA V  N+ + +  P K    +C
Sbjct: 42  GSPASVASNASAPLHIPAKRAAYDC 66


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,962
Number of Sequences: 336
Number of extensions: 3517
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15248386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)