Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11i14f
(603 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po... 41 1e-04
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac... 30 0.30
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 27 2.1
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe... 27 2.8
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 26 3.7
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 26 4.9
SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyc... 25 8.5
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 25 8.5
SPBC1271.06c |mug96||sequence orphan|Schizosaccharomyces pombe|c... 25 8.5
>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 793
Score = 41.1 bits (92), Expect = 1e-04
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Frame = +3
Query: 324 LSADRAYILAPSEVQQVYRYSTTAKFALYNIATATSVDIANGQR---LQLCIFG-GGHSL 491
+S D Y+L Q +R+S+ A++ LYN T + + L + GH L
Sbjct: 124 ISFDAKYVLVSVNKSQRWRHSSFAQYYLYNTETKDVNMLGQDNEHWTISLAEWSPTGHQL 183
Query: 492 AYVLNNNVYYLPENRNQAIQLTNDGIPGVIYNGHTD 599
++V NN++ Y+ +N +LT DG V +NG TD
Sbjct: 184 SFVYNNDL-YVRKNDGNVQRLTYDGTVDV-FNGLTD 217
>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 853
Score = 29.9 bits (64), Expect = 0.30
Identities = 23/111 (20%), Positives = 46/111 (41%), Gaps = 3/111 (2%)
Frame = +3
Query: 276 LVAGDLMAFLNTNNPILSADRAYILAPSEVQQVYRYSTTAKFALYNIATATSVDIANGQR 455
L+ ++ N + S+D YI + +R+S L AT +A+ Q
Sbjct: 165 LITSFVLTCKNLHRKRYSSDMEYIAFSCSKDRRWRHSYYEDVYLVERATGRIEHLASDQS 224
Query: 456 LQLCIFGG---GHSLAYVLNNNVYYLPENRNQAIQLTNDGIPGVIYNGHTD 599
++ + GH L Y L +N++ + +T+ ++NG++D
Sbjct: 225 KKIVVAEWSPIGHKLVYGLGSNLFIWESFSEPPVCITDQSDLDGLFNGNSD 275
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +3
Query: 516 YYLPENRNQAIQLTNDGIPGVIYNGHTD 599
++ PE+ + ++L + +PGV+ NG TD
Sbjct: 1516 HFTPESEHYYLEL-KESLPGVLQNGQTD 1542
>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 738
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 427 HPSTSRMANVSSYASSAVDTPSP 495
HPSTS +++SS ++ +V P+P
Sbjct: 61 HPSTSSTSHISSPSAFSVQNPNP 83
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 26.2 bits (55), Expect = 3.7
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -3
Query: 199 SEIQTPVK-PRCVNCPVTNSSRVKELWLDAVVTTAANTHHH 80
+++ PV+ PR V PVTN+S ++ W D AN+ H
Sbjct: 263 NQLNEPVEQPRVVQTPVTNASE-QQAWNDFDEILHANSSVH 302
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 25.8 bits (54), Expect = 4.9
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +1
Query: 436 TSRMANVSSYASSAVDTPSPMCLTTTFITYPRTGIKLFNLRMTVSPESYT 585
TS ++VSS+ SS+ + + + T +TY TG + T SP Y+
Sbjct: 303 TSVPSSVSSFTSSSSSYTTTLTASNTSVTYTGTGTG--SATFTSSPPFYS 350
Score = 25.0 bits (52), Expect = 8.5
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +1
Query: 436 TSRMANVSSYASSAVDTPSPMCLTTTFITYPRTGIKLFNLRMTVSPESYT 585
TS ++VSS+ SS + + + T ITY TG + T SP Y+
Sbjct: 357 TSVPSSVSSFTSSNSSYTTTLTASNTSITYTGTGTG--SATFTSSPPFYS 404
>SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 150
Score = 25.0 bits (52), Expect = 8.5
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Frame = +3
Query: 216 TIAGEPGIHMFNVQTLTSSVLVAGDLMAFLNT--NNPILSADRAYILAPSEVQQVYRYST 389
T G+ I N LT+ + A N+ +NP+ +AY P+E V Y T
Sbjct: 61 TKKGQATIPFTNFYPLTAPPPYTAEPEARYNSTIHNPMPPMSQAYRPPPTEPPTVPAYET 120
Query: 390 TAKF--ALYNIATATS 431
+++F Y A ATS
Sbjct: 121 SSEFPPPAYPEAAATS 136
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = -2
Query: 326 QNWIVSIQKCHKIASNKYTTCQSLYIEHVN 237
Q++ V+ Q+C+ + ++ + Q L +EH N
Sbjct: 449 QSYFVTKQRCYDLLTDLVCSSQDLMMEHSN 478
>SPBC1271.06c |mug96||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 146
Score = 25.0 bits (52), Expect = 8.5
Identities = 16/62 (25%), Positives = 29/62 (46%)
Frame = +1
Query: 175 VLPASGFLTQNSRTQLLVNLVFTCSMYKL*QVVYLLLAILWHF*ILTIQFCQLIEPTFWL 354
++ A FL Q + + +L+ TC +V +LL++LW ++ LIE +
Sbjct: 71 IMRAFSFLMQVATCLIRYSLILTC-------LVAILLSVLWRIQFAALRMHDLIEEELKM 123
Query: 355 LV 360
V
Sbjct: 124 FV 125
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,681,885
Number of Sequences: 5004
Number of extensions: 56597
Number of successful extensions: 167
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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