Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11i14f
         (603 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9926| Best HMM Match : DPPIV_N (HMM E-Value=0)                      46   2e-05
SB_1785| Best HMM Match : DPPIV_N (HMM E-Value=0.00044)                43   2e-04
SB_19105| Best HMM Match : 7tm_1 (HMM E-Value=5e-08)                   30   1.7  
SB_2571| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.9  
SB_24089| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_42685| Best HMM Match : MFS_1 (HMM E-Value=0.073)                   28   6.7  
SB_43189| Best HMM Match : PGAMP (HMM E-Value=2.1)                     27   8.8  

>SB_9926| Best HMM Match : DPPIV_N (HMM E-Value=0)
          Length = 1066

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 41/162 (25%), Positives = 78/162 (48%), Gaps = 8/162 (4%)
 Frame = +3

Query: 138 LEEFVTGQFTQRGFTGVWISDTEFTYTIAGEPGIHMFNVQTLTSSV--LVAGDLMAFLNT 311
           L++  +G++  +  +  W+SD   TY   G PG  +   +  + +   +V+   +  L  
Sbjct: 151 LDDVFSGKYQPKFPSVKWLSDD--TYRSFG-PGGSIITTEAFSGAQTEVVSAKSLEALGG 207

Query: 312 NNPILSADRAYILAPSEVQQVYRYSTTAKFALYNIA--TATSVDIANGQRLQLCIFG-GG 482
               LS D+  +         YRYS+ A + +Y+IA      +  + G ++Q   +    
Sbjct: 208 EGYTLSPDKTMLFFAKNKTMEYRYSSFADYFVYDIAKNKYEKIVTSGGVQIQHVRWAPDR 267

Query: 483 HSLAYVLNNNVYYLPENR---NQAIQLTNDGIPGVIYNGHTD 599
           ++L YV+ N+++Y+ + R    +A +LTNDG    I+NG  D
Sbjct: 268 NALVYVVENDMHYIDDVRLPLPEAHRLTNDGDRLRIFNGVPD 309


>SB_1785| Best HMM Match : DPPIV_N (HMM E-Value=0.00044)
          Length = 307

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
 Frame = +3

Query: 375 YRYSTTAKFALYNIATATSVDIA---NGQRLQLCIFGG-GHSLAYVLNNNVYYLPENRNQ 542
           YR+S +A F  YN+ T   V I      +R+QL ++G  G  +A+V +NN++Y       
Sbjct: 25  YRHSFSADFYGYNVHTGQVVRIVGPDENKRVQLVVWGNTGSVVAFVQSNNIFYQGCANCT 84

Query: 543 AIQLTNDGIPGVIYNGHTD 599
              LT +G    IYNG  D
Sbjct: 85  RHTLTTNGETNKIYNGVPD 103


>SB_19105| Best HMM Match : 7tm_1 (HMM E-Value=5e-08)
          Length = 791

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/64 (25%), Positives = 30/64 (46%)
 Frame = +3

Query: 207 FTYTIAGEPGIHMFNVQTLTSSVLVAGDLMAFLNTNNPILSADRAYILAPSEVQQVYRYS 386
           +T +I     +   N   + +S  V G + AF+  +N +L     + LAP+EV+    Y+
Sbjct: 214 YTNSIYQPTEVRDHNTAFIRASNEVLGHITAFIRASNEVLGHITTFTLAPAEVRTPIPYT 273

Query: 387 TTAK 398
              +
Sbjct: 274 NRGR 277


>SB_2571| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 760

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = +2

Query: 35  VFSVIHHIT--KKNGRDVVVRVSRCGYNCIKPELLHSGG 145
           +FS+ H +T  K   + ++ + SR   + +K E+LHSGG
Sbjct: 573 IFSLEHPLTGEKAIAKIIITQTSRIDESSLKLEILHSGG 611


>SB_24089| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 693

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = -2

Query: 488 GVSTAEDA*LETLAIRDVDGCRCSYIVQ 405
           GV  A D  LE L  RD  GCRC  + Q
Sbjct: 333 GVVEAADVILEVLDARDPIGCRCPQVEQ 360


>SB_42685| Best HMM Match : MFS_1 (HMM E-Value=0.073)
          Length = 217

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +1

Query: 181 PASGFLTQNSRTQLLVNLVFTCSMYKL*QVVYLL-LAILWHF 303
           PA+G L      Q LVN V     Y++  VV++L  A+ W F
Sbjct: 96  PAAGVLVMGPSLQALVNAVGWRHAYRILSVVFVLSCALSWPF 137


>SB_43189| Best HMM Match : PGAMP (HMM E-Value=2.1)
          Length = 461

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/52 (25%), Positives = 22/52 (42%)
 Frame = +1

Query: 388 RQPSSPCTI*LQRHPSTSRMANVSSYASSAVDTPSPMCLTTTFITYPRTGIK 543
           R PS PC++   RHP T   + ++      +         +  + +P TG K
Sbjct: 13  RVPSRPCSLRTVRHPHTGTKSTMAYARDDTLTRTRVPSRPSRTVRHPHTGTK 64


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,767,422
Number of Sequences: 59808
Number of extensions: 456414
Number of successful extensions: 1287
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1286
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)