Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11i14f
         (603 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66560-2|CAE17736.1|  127|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z50872-4|CAA90757.2|  498|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z70780-2|CAA94821.1|  468|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z77666-6|CAB01232.1| 1321|Caenorhabditis elegans Hypothetical pr...    28   5.9  
X65054-1|CAA46190.1| 1321|Caenorhabditis elegans P-glycoprotein ...    28   5.9  
AF043698-4|AAB97560.1|  275|Caenorhabditis elegans Hypothetical ...    28   5.9  
AF043698-3|AAK68268.1|  268|Caenorhabditis elegans Hypothetical ...    28   5.9  

>Z66560-2|CAE17736.1|  127|Caenorhabditis elegans Hypothetical
           protein D1053.4 protein.
          Length = 127

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
 Frame = -2

Query: 302 KCHKIASNKYTTCQSLYIEHVNT---RFTSNCVREFCVRNPDAGKTSLRKLSCNELLQSE 132
           +C+K   N +++CQ  Y   ++T         V++ C+   DA +T + K +    L+  
Sbjct: 32  RCNKEIGNSFSSCQGKYCYKMHTPDDTTVDGIVKKGCMNAADA-QTEVGKCT-RRPLEEG 89

Query: 131 GALA*CSCN 105
           GA   C CN
Sbjct: 90  GAELMCVCN 98


>Z50872-4|CAA90757.2|  498|Caenorhabditis elegans Hypothetical
           protein C05D12.1 protein.
          Length = 498

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 89  RVSRCGYNCIKPELLHSGGVRYRTIYATRFYR-RLDF*HRIHVHNCW 226
           +VS C  NC  P L H G +R +T   +R++R R+   H I +   W
Sbjct: 208 QVSFCRTNCSSPNLYHIGEMR-QTYNVSRYWRYRIAVWHGILLMFAW 253


>Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical
           protein F36H2.3 protein.
          Length = 1388

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -3

Query: 373 TC*TSLGARM*ALSADRIGLLVFKNAIRSPATSTLLVKV-CTLN 245
           TC + L  +   LSA R G LVF N+++SP +   ++ + C  N
Sbjct: 339 TCLSLLDIKCPILSAPRNGELVFTNSVKSPYSLNSVISLKCDRN 382


>Z70780-2|CAA94821.1|  468|Caenorhabditis elegans Hypothetical
           protein F46B6.4 protein.
          Length = 468

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +3

Query: 348 LAPSEVQQVYRYSTTAKFALYNIATATSVDIANGQ--RLQLCI 470
           L+PS+ Q++YR      F  YNI  AT    A  +  R+Q+ I
Sbjct: 121 LSPSQQQELYRIFEVPIFDRYNIVLATFKQFAKTEEARIQIAI 163


>Z77666-6|CAB01232.1| 1321|Caenorhabditis elegans Hypothetical
           protein K08E7.9 protein.
          Length = 1321

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
 Frame = +3

Query: 363 VQQVYRYSTTAKFALYNIATATSVDIANGQRLQLCIFGGGHSLAY-----VLNNN-VYYL 524
           + Q+YRY+TT +  L  I T  +V    G  L + I  G  S A+     V+NNN   +L
Sbjct: 62  IPQLYRYTTTLEKLLLFIGTLVAVITGAGLPL-MSILQGKVSQAFINEQIVINNNGSTFL 120

Query: 525 PENRN 539
           P  +N
Sbjct: 121 PTGQN 125


>X65054-1|CAA46190.1| 1321|Caenorhabditis elegans P-glycoprotein A
           protein.
          Length = 1321

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
 Frame = +3

Query: 363 VQQVYRYSTTAKFALYNIATATSVDIANGQRLQLCIFGGGHSLAY-----VLNNN-VYYL 524
           + Q+YRY+TT +  L  I T  +V    G  L + I  G  S A+     V+NNN   +L
Sbjct: 62  IPQLYRYTTTLEKLLLFIGTLVAVITGAGLPL-MSILQGKVSQAFINEQIVINNNGSTFL 120

Query: 525 PENRN 539
           P  +N
Sbjct: 121 PTGQN 125


>AF043698-4|AAB97560.1|  275|Caenorhabditis elegans Hypothetical
           protein C54G6.1a protein.
          Length = 275

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 303 LNTNNPILSADRAYILAPSEVQQVYR 380
           L T  PI+  D   + AP+E+QQ+ R
Sbjct: 204 LKTATPIIDFDAELLAAPAEIQQILR 229


>AF043698-3|AAK68268.1|  268|Caenorhabditis elegans Hypothetical
           protein C54G6.1b protein.
          Length = 268

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 303 LNTNNPILSADRAYILAPSEVQQVYR 380
           L T  PI+  D   + AP+E+QQ+ R
Sbjct: 197 LKTATPIIDFDAELLAAPAEIQQILR 222


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,237,391
Number of Sequences: 27780
Number of extensions: 331334
Number of successful extensions: 981
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)