Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11i14f
         (603 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g34220.1 68417.m04862 leucine-rich repeat transmembrane prote...    29   2.4  
At1g14780.1 68414.m01767 expressed protein                             28   5.5  
At5g20730.3 68418.m02464 auxin-responsive factor (ARF7) identica...    27   9.6  
At5g20730.2 68418.m02463 auxin-responsive factor (ARF7) identica...    27   9.6  
At5g20730.1 68418.m02462 auxin-responsive factor (ARF7) identica...    27   9.6  
At3g47890.1 68416.m05222 ubiquitin carboxyl-terminal hydrolase-r...    27   9.6  
At1g70160.1 68414.m08073 expressed protein similar to hypothetic...    27   9.6  

>At4g34220.1 68417.m04862 leucine-rich repeat transmembrane protein
           kinase, putative protein kinase TMKL1, Arabidopsis
           thaliana, PID:E353150
          Length = 757

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = -3

Query: 214 YVNSVSEIQTPVKPRCVNCPVTNSSRVKELWLDAVVTTAANTHHHIPT 71
           Y+N   ++   +KP  +     N   + +L LD ++T A  +H   PT
Sbjct: 595 YINEKKQVHGNIKPNNILLNAENEPIITDLGLDRLMTPARESHTTGPT 642


>At1g14780.1 68414.m01767 expressed protein
          Length = 627

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 151 TNSSRVKELWLDAVVTTAANTHHHIP 74
           T+++ VK L LDA V T  N H H P
Sbjct: 121 TDAANVKSLGLDASVVTLFNLHIHNP 146


>At5g20730.3 68418.m02464 auxin-responsive factor (ARF7) identical
           to auxin response factor 7 GI:4104929 from [Arabidopsis
           thaliana]
          Length = 1150

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +1

Query: 4   SRWRFKPTASSFF-CNPPYYKKKWSGCGG 87
           S W  +P  + F+ C PP+++ ++SG  G
Sbjct: 352 SVWDIEPVLTPFYICPPPFFRPRFSGQPG 380


>At5g20730.2 68418.m02463 auxin-responsive factor (ARF7) identical
           to auxin response factor 7 GI:4104929 from [Arabidopsis
           thaliana]
          Length = 1164

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +1

Query: 4   SRWRFKPTASSFF-CNPPYYKKKWSGCGG 87
           S W  +P  + F+ C PP+++ ++SG  G
Sbjct: 351 SVWDIEPVLTPFYICPPPFFRPRFSGQPG 379


>At5g20730.1 68418.m02462 auxin-responsive factor (ARF7) identical
           to auxin response factor 7 GI:4104929 from [Arabidopsis
           thaliana]
          Length = 1165

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +1

Query: 4   SRWRFKPTASSFF-CNPPYYKKKWSGCGG 87
           S W  +P  + F+ C PP+++ ++SG  G
Sbjct: 352 SVWDIEPVLTPFYICPPPFFRPRFSGQPG 380


>At3g47890.1 68416.m05222 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1568

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +3

Query: 345 ILAPSEVQQVYRYSTTAKFALYNIATATSVDIANG 449
           +L    +Q++Y  S     AL+N+A A+S DIANG
Sbjct: 604 LLGTECIQEIYMGS-----ALHNVAVASSGDIANG 633


>At1g70160.1 68414.m08073 expressed protein similar to hypothetical
           protein GI:4455225 from [Arabidopsis thaliana]
          Length = 523

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +1

Query: 100 LWLQLHQARAPSLWRSSLQDNLRNEVLPASGFLTQNSR 213
           +W ++  A A ++W  +L   L  E L   G L + +R
Sbjct: 362 MWTRVQPAYAANMWNEALNKRLGTEDLDLYGILEETAR 399


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,188,872
Number of Sequences: 28952
Number of extensions: 300174
Number of successful extensions: 772
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)