Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11i13r
(721 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0786 - 7606984-7607037,7607235-7607379,7608103-7608163,760... 31 0.70
04_03_0811 - 19909128-19912214 30 2.1
12_02_0304 + 17112677-17113195 29 3.7
12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649 29 4.9
07_03_0951 - 22836167-22836358,22836455-22837213 29 4.9
03_01_0014 + 113638-113754,113836-113950,114570-114835,115365-11... 29 4.9
02_02_0549 + 11410129-11412180 29 4.9
03_06_0203 - 32337928-32338025,32338745-32338820,32338905-323389... 28 6.5
08_02_1480 + 27401923-27402158,27402847-27402982,27403119-274031... 28 8.6
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 28 8.6
01_07_0385 - 43212580-43213142,43213234-43213612 28 8.6
>08_01_0786 -
7606984-7607037,7607235-7607379,7608103-7608163,
7608273-7608465
Length = 150
Score = 31.5 bits (68), Expect = 0.70
Identities = 18/42 (42%), Positives = 22/42 (52%)
Frame = +1
Query: 595 ERVLVSKEAPQIEVLPFVSAITSPARWG*APALAAEPPTILV 720
E + AP LPF S + + AR G APAL+A P LV
Sbjct: 2 EATAAAAAAPARSALPFRSRVAAAARPGRAPALSAAPGRRLV 43
>04_03_0811 - 19909128-19912214
Length = 1028
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +2
Query: 599 GCWSVRKLRRLKFCHS*VRSQVQQDGGEHQRWRQ 700
GCWS+R+L L+ HS SQ + GE WR+
Sbjct: 962 GCWSLRRLPLLRQEHS---SQAVEVSGERAWWRK 992
>12_02_0304 + 17112677-17113195
Length = 172
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -1
Query: 559 PRLVSSPSLLAQLTSSPEAPGSPPPV 482
PR SPS+ A+ T +P SPPPV
Sbjct: 42 PRRAPSPSVTAEPTPAPVIAPSPPPV 67
>12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649
Length = 461
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -3
Query: 626 CGASLLTNTRSVTAAHCWRSR 564
CG+ ++T TRSVT A C S+
Sbjct: 275 CGSRIITTTRSVTVASCCSSQ 295
>07_03_0951 - 22836167-22836358,22836455-22837213
Length = 316
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -2
Query: 300 SQQPTKTPSQPSGHY*RRLRPDFWK 226
S PT TPSQPS Y RR R + W+
Sbjct: 63 SPPPTPTPSQPSSSYHRR-RRESWE 86
>03_01_0014 +
113638-113754,113836-113950,114570-114835,115365-115575,
115915-115979,118723-118930,119457-119566,119663-119913,
120250-120356,120442-120509,120624-120701,121070-121198,
121341-121481,122297-122344,122648-122743,124071-124183,
124441-124591,124745-124818,124913-125072,125356-125454,
125532-125618,125761-125907
Length = 946
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/39 (28%), Positives = 15/39 (38%)
Frame = +2
Query: 278 GVFVGCWLPKQHRKFCRSRQPRPKYQQSCCFHWLG*CAE 394
G + G + + RK+ P CC HW C E
Sbjct: 149 GTYTGIFRQELQRKYHLKNSPCDPCMVHCCLHWCANCQE 187
>02_02_0549 + 11410129-11412180
Length = 683
Score = 28.7 bits (61), Expect = 4.9
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = -3
Query: 539 LAFGTANIFSGGTRVTTSSVHMHGSYNMNNLHN-DVAVINHNHVGFNNNIQRINLASGSN 363
LA +F+G V ++S H+ + ++ + N D IN+NHVG N N +LAS N
Sbjct: 129 LANNYMGLFNGTGSVGSASNHLF-AVELDTIQNPDFRDINNNHVGININ----DLASRDN 183
Query: 362 N 360
+
Sbjct: 184 D 184
>03_06_0203 -
32337928-32338025,32338745-32338820,32338905-32338971,
32339181-32339275,32340062-32340151,32340293-32340340,
32340764-32341069
Length = 259
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -1
Query: 559 PRLVSSPSLLAQLTSSPEAPGSPPP 485
PRLVSSP+ L + P+ P P P
Sbjct: 49 PRLVSSPAKLTDDATPPQPPPQPQP 73
>08_02_1480 +
27401923-27402158,27402847-27402982,27403119-27403168,
27403810-27403813,27404394-27404494,27405084-27406305
Length = 582
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -1
Query: 547 SSPSLLAQLTSSPEAPGSPPP 485
SS S + +SSP AP SPPP
Sbjct: 7 SSTSSSSSASSSPRAPSSPPP 27
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 27.9 bits (59), Expect = 8.6
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 674 GGEHQRWRQNHPQSW 718
GG HQR R +HP +W
Sbjct: 559 GGHHQRRRHHHPPAW 573
>01_07_0385 - 43212580-43213142,43213234-43213612
Length = 313
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +3
Query: 486 GGGDPGASGEDVSCAKSEGELTSLGIPGPP--AVSSGHR 596
GGGD GAS VS A + +G+ PP V +G R
Sbjct: 182 GGGDGGASSVVVSAAAAAARRLPVGVRKPPLHVVVTGER 220
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,641,632
Number of Sequences: 37544
Number of extensions: 351565
Number of successful extensions: 1482
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1481
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -