Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11i13f
(574 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g13600.1 68417.m02117 glycosyl hydrolase family protein 17 si... 29 2.9
At1g04310.1 68414.m00422 ethylene receptor-related similar to et... 29 2.9
At4g13800.1 68417.m02139 permease-related contains 9 predicted t... 28 3.8
At4g13560.1 68417.m02113 late embryogenesis abundant domain-cont... 28 3.8
At1g68050.1 68414.m07774 F-box family protein (FKF1) / adagio 3 ... 28 3.8
At1g52960.1 68414.m05990 hypothetical protein very low similarit... 28 3.8
At5g23410.1 68418.m02745 expressed protein similar to Adagio 3 [... 28 5.1
At3g46690.1 68416.m05068 UDP-glucoronosyl/UDP-glucosyl transfera... 28 5.1
At5g67370.1 68418.m08495 expressed protein similar to unknown pr... 27 6.7
At3g43350.1 68416.m04582 helicase-related low similarity to SP|Q... 27 8.9
At2g20690.1 68415.m02429 lumazine-binding family protein SP|P508... 27 8.9
At1g71070.1 68414.m08202 glycosyltransferase family 14 protein /... 27 8.9
>At4g13600.1 68417.m02117 glycosyl hydrolase family protein 17
similar to elicitor inducible chitinase Nt-SubE76
GI:11071974 from [Nicotiana tabacum]
Length = 183
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 478 HNHVGFNNNIQRINLASGSNNFAGT 552
H FN+ QR +A GS NFAGT
Sbjct: 67 HASYAFNSYFQRAAMAPGSCNFAGT 91
>At1g04310.1 68414.m00422 ethylene receptor-related similar to
ethylene receptor CS-ETR2 [Cucumis sativus] GI:6136818;
contains Pfam profiles PF01590: GAF domain, PF00512: His
Kinase A (phosphoacceptor) domain
Length = 645
Score = 28.7 bits (61), Expect = 2.9
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = -3
Query: 491 PTWLWLMTATSLWRLFML*LPCIWTLEVVTLVP 393
P W W+MTA +++++ + + L +VTL+P
Sbjct: 110 PHWPWVMTAVTVFKMLTGIVSFLTALSLVTLLP 142
>At4g13800.1 68417.m02139 permease-related contains 9 predicted
transmembrane domains; contains Pfam PF05653: Protein of
unknown function (DUF803); identified as COG0697,
Permeases of the drug/metabolite transporter (DMT)
superfamily
Length = 336
Score = 28.3 bits (60), Expect = 3.8
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -2
Query: 243 HKSSKMGVSTSVGGRTTHNP 184
HK+ MG STS+ G T+H+P
Sbjct: 294 HKTKDMGNSTSLRGSTSHSP 313
>At4g13560.1 68417.m02113 late embryogenesis abundant
domain-containing protein / LEA domain-containing
protein similar to LEA protein [Cicer arietinum]
GI:2909420; contains Pfam profile PF02987: Late
embryogenesis abundant protein
Length = 109
Score = 28.3 bits (60), Expect = 3.8
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 370 QKRG*TDEPGHPWTSSSEQRSQSGC 296
Q RG E WT S++Q +QS C
Sbjct: 10 QNRGQAQEKAEQWTESAKQTAQSAC 34
>At1g68050.1 68414.m07774 F-box family protein (FKF1) / adagio 3
(ADO3) E3 ubiquitin ligase SCF complex F-box subunit;
identical to FKF1 GI:6960305 and Adagio 3 GI:13487072
from [Arabidopsis thaliana]; contains Pfam profiles
PF01344: Kelch motif, PF00785: PAC motif and PF00646:
F-box domain; contains TIGRfam profile TIGR00229: PAS
domain S-boxidentical to cDNA Adagio 3 (ADO3)
GI:13487071
Length = 619
Score = 28.3 bits (60), Expect = 3.8
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +1
Query: 325 WRSRDAQARQFTLAFGTANIFSGGTRVTTSSVHMHGSYNMNNLH 456
WR + + LA+G + GGTRV H + +N LH
Sbjct: 564 WRILNVPGKPPKLAWGHSTCVVGGTRVLVLGGHTGEEWILNELH 607
>At1g52960.1 68414.m05990 hypothetical protein very low similarity
to SP|Q9UUA2 DNA repair and recombination protein pif1,
mitochondrial precursor {Schizosaccharomyces pombe}
Length = 996
Score = 28.3 bits (60), Expect = 3.8
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = -2
Query: 207 GGRTTHNPGTVEVSGFLGALKTLGPGDTDLGVVVKFDSLFCHDHGRQRHQYCCEDL 40
GGRTTH+ + ++ + + G +DLG +VK +L D ++C E L
Sbjct: 610 GGRTTHSRFGIPINPNESSTCNISRG-SDLGELVKEANLIIWDETPMMSKHCFESL 664
>At5g23410.1 68418.m02745 expressed protein similar to Adagio 3
[Arabidopsis thaliana] GI:13487072/FKF1 [Arabidopsis
thaliana] GI:6960305
Length = 84
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +1
Query: 325 WRSRDAQARQFTLAFGTANIFSGGTRVTTSSVHMHGSYNMNNLH 456
WR + + LA+G + GGTRV H + +N LH
Sbjct: 29 WRILNVPGKPPKLAWGHSTCVVGGTRVLVLGGHNGEEWILNELH 72
>At3g46690.1 68416.m05068 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 452
Score = 27.9 bits (59), Expect = 5.1
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = -3
Query: 311 VTERVLVSKEAPQIEVL--PFVSAITSPARW 225
VTER ++K APQIEVL P V S W
Sbjct: 323 VTERGYIAKWAPQIEVLGHPAVGGFWSHCGW 353
>At5g67370.1 68418.m08495 expressed protein similar to unknown
protein (gb|AAC18972.1)
Length = 327
Score = 27.5 bits (58), Expect = 6.7
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +3
Query: 180 YQDCGWFCRQRWCSPPSCWTCDR 248
Y++ GW+ Q W PP DR
Sbjct: 185 YEESGWYDGQMWVKPPEVLARDR 207
>At3g43350.1 68416.m04582 helicase-related low similarity to
SP|Q9UUA2 DNA repair and recombination protein pif1,
mitochondrial precursor {Schizosaccharomyces pombe}
Length = 830
Score = 27.1 bits (57), Expect = 8.9
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = -2
Query: 207 GGRTTHNPGTVEVSGFLGALKTLGPGDTDLGVVVKFDSLFCHDHGRQRHQYCCEDL 40
GGRT H+ + ++ + + G +DLG +VK L D ++C E L
Sbjct: 242 GGRTAHSRFDIPINPNESSTCNISRG-SDLGELVKEAKLIIWDEAPMMSKHCFESL 296
>At2g20690.1 68415.m02429 lumazine-binding family protein SP|P50854
Riboflavin synthase alpha chain (EC 2.5.1.9)
{Actinobacillus pleuropneumoniae}; contains Pfam profile
PF00677: Lumazine binding domain
Length = 271
Score = 27.1 bits (57), Expect = 8.9
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = -2
Query: 252 ECDHKSSKMGVSTSVG-GRTTHNPGTVEV-SGFLGALKTLGPGDTDLGV 112
+C KSSK+ + TS G RT H + + S F G ++ +G DLG+
Sbjct: 33 DCVSKSSKLSLKTSCGRSRTHHRRQNLSIRSVFTGIVEEMGE-VKDLGM 80
>At1g71070.1 68414.m08202 glycosyltransferase family 14 protein /
core-2/I-branching enzyme family protein similar to
glucosaminyl (N-acetyl) transferase GB:4758422 from
[Homo sapiens]
Length = 395
Score = 27.1 bits (57), Expect = 8.9
Identities = 9/21 (42%), Positives = 10/21 (47%)
Frame = +3
Query: 213 WCSPPSCWTCDRTHEWQNFNL 275
WCS S W D EW N+
Sbjct: 346 WCSSHSSWWTDPCSEWDEVNI 366
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.129 0.389
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,629,126
Number of Sequences: 28952
Number of extensions: 212542
Number of successful extensions: 906
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -