Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11i11r
         (503 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0405 - 21866058-21866255,21866711-21867172,21867389-21867577     29   2.8  
09_04_0393 + 17255315-17256019,17256107-17257909                       27   6.5  
07_03_1756 - 29239137-29239325,29239741-29240259,29240693-292408...    27   8.6  
07_03_0001 + 12219741-12219927,12219976-12220955                       27   8.6  

>01_05_0405 - 21866058-21866255,21866711-21867172,21867389-21867577
          Length = 282

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 24/75 (32%), Positives = 33/75 (44%)
 Frame = -2

Query: 307 PVEMENPFKKELKQCILCKLNIDPDYKNYRLLSQFQSPYTGRIYPRHITGLCKRKQMQVE 128
           P E  N  K EL       L   PDY  +  LS   +P +G    +H+TG C+RK     
Sbjct: 214 PFEESNVPKVELVTINKALLGDTPDY--HGKLSV--TPQSGTAVQQHLTGACRRK--NGA 267

Query: 127 QEITKAQDLAYMPYT 83
               + +DL+  P T
Sbjct: 268 NRFLRNRDLSTSPRT 282


>09_04_0393 + 17255315-17256019,17256107-17257909
          Length = 835

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 20/50 (40%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
 Frame = -2

Query: 214 LSQFQSPYTGRIYPRHITGLCKRKQMQVEQEITK-AQDLAYMPYTYKHKI 68
           L Q Q  YT  I  R  T    RK +   QEI K  QDL     T K  I
Sbjct: 347 LDQLQKEYTSLISQRDNTETKARKAIVASQEIEKVVQDLTIKVITMKDLI 396


>07_03_1756 -
           29239137-29239325,29239741-29240259,29240693-29240800,
           29240856-29241155,29241730-29241831,29243042-29243209,
           29243878-29243991,29244184-29244288,29244372-29244502,
           29244794-29244918,29245001-29245172,29245277-29245316,
           29245636-29245722,29245803-29245868,29246412-29246510,
           29246714-29246836,29247066-29247107,29247195-29247260,
           29247362-29247553,29247672-29247737,29248839-29249141
          Length = 1038

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +1

Query: 52  LDLSKIFYVCKCTAYRLNPEPWLFPAPLASVFFYI 156
           +DLSK+ +VC      + P P L    + ++  YI
Sbjct: 573 IDLSKVLFVCTANVIEMIPNPLLDRMEIIAIAGYI 607


>07_03_0001 + 12219741-12219927,12219976-12220955
          Length = 388

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = +1

Query: 187 PCTEIEIAIIICNSCNRDLY*VYRVYIVSVL 279
           PC    I  I   S NR +Y V+RVYI S L
Sbjct: 165 PCPTSAIFHIFGESDNRGIYLVHRVYICSDL 195


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,035,980
Number of Sequences: 37544
Number of extensions: 297355
Number of successful extensions: 755
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)