Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11i11r
         (503 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50191-9|AAK31558.1|  139|Caenorhabditis elegans Hypothetical pr...    99   2e-21
L23647-3|AAK67242.2|  183|Caenorhabditis elegans Hypothetical pr...    44   8e-05
U40060-7|AAA81145.2|  391|Caenorhabditis elegans Hypothetical pr...    29   2.5  
U41039-4|AAL11489.1|  452|Caenorhabditis elegans Synapse defecti...    28   3.3  
AY273823-1|AAQ01772.1| 1040|Caenorhabditis elegans VAB-19 protein.     28   4.4  
AC006688-1|AAF39969.3| 1040|Caenorhabditis elegans Variable abno...    28   4.4  
U70844-7|AAB09097.1|  686|Caenorhabditis elegans Adam (disintegr...    27   5.8  
Z81489-4|CAB04010.1|  361|Caenorhabditis elegans Hypothetical pr...    27   7.7  
AC024812-8|AAF59557.4|  912|Caenorhabditis elegans Hypothetical ...    27   7.7  

>U50191-9|AAK31558.1|  139|Caenorhabditis elegans Hypothetical
           protein T14B4.2 protein.
          Length = 139

 Score = 98.7 bits (235), Expect = 2e-21
 Identities = 51/129 (39%), Positives = 74/129 (57%), Gaps = 1/129 (0%)
 Frame = -2

Query: 412 ALFKSFFARQMLSTHQAVLSTIRTQSTNLKPDPDAPVEMEN-PFKKELKQCILCKLNIDP 236
           +L +SF   Q   T +   S+  TQ +      D PV +EN P+ KE ++  LC   ++ 
Sbjct: 7   SLVRSFIRPQ---TFRLCSSSSTTQGSPSVSSDDEPVILENNPYTKEPRKSFLCSTGVEL 63

Query: 235 DYKNYRLLSQFQSPYTGRIYPRHITGLCKRKQMQVEQEITKAQDLAYMPYTYKHKIFLKD 56
           DYKN RLL QF S ++GR+Y RHITGLC   + ++ + I K++   +MP   K   + +D
Sbjct: 64  DYKNSRLLQQFVSTFSGRVYDRHITGLCDENKKKLIEAIAKSRRAGFMPIFVKDPKYTRD 123

Query: 55  PKLFDPENP 29
           PKLFDP  P
Sbjct: 124 PKLFDPLKP 132


>L23647-3|AAK67242.2|  183|Caenorhabditis elegans Hypothetical
           protein ZC262.8 protein.
          Length = 183

 Score = 43.6 bits (98), Expect = 8e-05
 Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
 Frame = -2

Query: 283 KKELKQCILCKLN--IDPDYKNYRLLSQFQSPYTGRIYPRHITGLCKRKQMQVEQEITKA 110
           +K+ + C LC  N  I   YK+  +L QF     G + PR +TGLCK++Q+++E+ + +A
Sbjct: 62  RKDDELCSLCTCNVPIKLTYKDVLILEQFMRD-DGTVLPRQLTGLCKKQQLRMERCVMQA 120


>U40060-7|AAA81145.2|  391|Caenorhabditis elegans Hypothetical
           protein F38B6.7 protein.
          Length = 391

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -2

Query: 124 EITKAQDLAYMPYTYKHKIFLKDPKLFDPENPSAFS*ILI 5
           EI      A +PY ++  ++LK   LF    P++F  +L+
Sbjct: 236 EIRTGDHFAMLPYRFREPVYLKKVFLFHEPMPNSFFHVLV 275


>U41039-4|AAL11489.1|  452|Caenorhabditis elegans Synapse defective
           protein 9, isoformd protein.
          Length = 452

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -2

Query: 403 KSFFARQMLSTHQAVLSTIRTQSTNLKPDPDAPVEMENPF 284
           KSF + ++L  HQ +  T ++   +LK   DAPV M+  F
Sbjct: 27  KSFSSTKLLQQHQQMFHTDKSVLLSLK-STDAPVGMDRAF 65


>AY273823-1|AAQ01772.1| 1040|Caenorhabditis elegans VAB-19 protein.
          Length = 1040

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = -2

Query: 403 KSFFARQMLSTHQAVLSTIRTQSTNLKPDPDAPVEMENPFK 281
           +S F        Q VL+  RTQST+  P P AP     P K
Sbjct: 340 ESHFTYAQTQNGQKVLA--RTQSTSTSPPPQAPASAFEPVK 378


>AC006688-1|AAF39969.3| 1040|Caenorhabditis elegans Variable
           abnormal morphology protein19 protein.
          Length = 1040

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = -2

Query: 403 KSFFARQMLSTHQAVLSTIRTQSTNLKPDPDAPVEMENPFK 281
           +S F        Q VL+  RTQST+  P P AP     P K
Sbjct: 340 ESHFTYAQTQNGQKVLA--RTQSTSTSPPPQAPASAFEPVK 378


>U70844-7|AAB09097.1|  686|Caenorhabditis elegans Adam (disintegrin
           plus metalloprotease)family protein 4 protein.
          Length = 686

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 164 NWSM*KKTDASGAGNNQGSGFSL 96
           NW + K+ D SG G  Q  GFS+
Sbjct: 230 NWDVGKEDDISGRGRFQNMGFSI 252


>Z81489-4|CAB04010.1|  361|Caenorhabditis elegans Hypothetical
          protein C55A1.5 protein.
          Length = 361

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 33 FSGSNNFGSFKNILCL 80
          F G  NFGS+KN+L L
Sbjct: 45 FGGQKNFGSYKNLLVL 60


>AC024812-8|AAF59557.4|  912|Caenorhabditis elegans Hypothetical
           protein Y54E10BR.1 protein.
          Length = 912

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +1

Query: 58  LSKIFYVCKCTAYRLNPEPWLFPAPLASVFFYIDQLYASGRFCPCTEIEIAIIICNSCN 234
           L  + YV   TA+ +    + F    A+V   +D L  +  FC C+ +    I C S N
Sbjct: 625 LELMIYVQSATAFMIAVVNYGFEKFAATVNCSMDLLDLNPTFCDCSVVAHGSISCGSSN 683


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,675,544
Number of Sequences: 27780
Number of extensions: 278394
Number of successful extensions: 702
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)