Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11i11f
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    35   0.007
SPCC18B5.04 |rsm18||mitochondrial ribosomal protein subunit S18|...    34   0.012
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   3.2  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    25   5.6  
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch...    25   5.6  
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    25   7.3  
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb...    25   7.3  
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces...    25   7.3  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    25   9.7  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   9.7  
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    25   9.7  

>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 35.1 bits (77), Expect = 0.007
 Identities = 24/84 (28%), Positives = 39/84 (46%)
 Frame = +2

Query: 152 TIRTQSTNLKPDPDAPVEMENPFKKELKQCILCKLNIDPDYKNYRLLSQFQSPYTGRIYP 331
           T++T S+    D   PV  + P KK +   +   LN+   Y+    L + Q P    +  
Sbjct: 369 TVQTSSSAAPVDSAEPVAYQ-PIKKPIDPMLGYPLNVAATYRLDESLLRLQMPSIVDLGT 427

Query: 332 RHITGLCKRKQMQVEQEITKAQDL 403
            +I  LC   Q  +E+EIT A ++
Sbjct: 428 VNIQALCMSLQSTLEKEITYAMNV 451


>SPCC18B5.04 |rsm18||mitochondrial ribosomal protein subunit
           S18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 166

 Score = 34.3 bits (75), Expect = 0.012
 Identities = 20/52 (38%), Positives = 29/52 (55%)
 Frame = +2

Query: 272 YKNYRLLSQFQSPYTGRIYPRHITGLCKRKQMQVEQEITKAQDLAYMPYTYK 427
           +KN  +LS+F +   GRI PR  TGL  + Q  + + I +A+    MP  YK
Sbjct: 110 WKNPVILSRFVTEL-GRIKPRGDTGLTAKNQRLLSRAIRRARAAGIMPTKYK 160


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +2

Query: 230 LKQCILCKLNIDPDYKNYRLLSQFQSPYTGRIYPRHITGLCK 355
           +K C+L   N   +Y    +L     PYT RI  +    +CK
Sbjct: 645 IKSCLLLVQNAYGNYLVQHVLELNIQPYTERIIEKFFGNICK 686


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -3

Query: 471 FSGSNNFGSFKNILCL*VYGI*AKS*ALVISCSTCICFLLHRPVICL 331
           FS  +   +F  IL    Y     S  L++SC+TC+  ++    +C+
Sbjct: 409 FSTDSYIAAFSEILSGRNYDFGEVSIQLMLSCTTCVSNMMEALPLCM 455


>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
           45|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 558

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +2

Query: 59  IFLSINTYMKMALFKSFFARQMLSTHQAVLSTIRTQSTNLKP 184
           +++  N ++K  L      R   +TH  + S  R Q++N KP
Sbjct: 461 VYIQHNPFLKSILLDLIQGRLKETTHPFLNSETRAQTSNEKP 502


>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 137 QAVLSTIRTQSTNLKPDPDAPVEMENPFKKEL 232
           Q V+S  R  S++  P P +   + NPF++ L
Sbjct: 231 QKVISNNRLNSSSTPPTPRSSSSIFNPFRRAL 262


>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 827

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 83  MKMALFKSFFARQMLSTHQAVLSTIRTQSTNLKP 184
           +K  L     + ++LST QAV  +I +   N KP
Sbjct: 698 LKKELLSKRLSEKLLSTLQAVSDSIESAKANRKP 731


>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 229 FFFEWIFHFNWGIWVWFEVGGLCPDCG 149
           F+  W  H+++  WV   + GL   CG
Sbjct: 462 FWLSWSGHYSYVNWVVPALSGLATGCG 488


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 41  ICLHVCIFLSINTYMKMALFKSFFARQMLST 133
           + L + IFLSI  +  + L +SF+ R ++ST
Sbjct: 817 LALEILIFLSIKLFKPLELTRSFW-RTLVST 846


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +2

Query: 224 KELKQCILCKLNIDPDYKNYRLLSQFQSPYTGRIYPRHITGL 349
           K +   ILC   +D  YK   L+SQ  +     +Y  H+  +
Sbjct: 763 KRIYSKILCTPEVDSSYKPKVLVSQIWNSIIISLYREHLLAI 804


>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
           polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 197 PVEMENPFKKELKQCILCKLNIDPDYKN 280
           P+E   P+K ELK  I     ID  YK+
Sbjct: 2   PIEAYEPYKNELKSKIGKDFIIDLSYKS 29


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,307,608
Number of Sequences: 5004
Number of extensions: 49115
Number of successful extensions: 132
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)