Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11i11f
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53762| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_16986| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.8  
SB_30463| Best HMM Match : ZF-HD_dimer (HMM E-Value=5.4)               27   7.6  
SB_12247| Best HMM Match : zf-C4_ClpX (HMM E-Value=1.8)                27   7.6  
SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   7.6  
SB_36015| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_9425| Best HMM Match : F-box (HMM E-Value=1.1e-11)                  27   7.6  

>SB_53762| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1010

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 239 CILCKLNIDPDYKNYRLLSQFQSPYTGRI 325
           C  C + +DPDY +YRL+S    P+  R+
Sbjct: 244 CNQCLMRLDPDY-SYRLMSAVNHPHQDRM 271


>SB_16986| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 615

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 115 PANVKHSSGSTLHNQD-TIHQPQTRPRCP 198
           P +  H+ GST H Q+ T H P++ P  P
Sbjct: 175 PGSTPHTPGSTPHTQESTPHSPESTPHTP 203


>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 721

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -1

Query: 323 FCPCTEIEIAIIICNSCNRDLY*VYRVYIVSVL 225
           +CP    EIA+I CNSC +    ++ + ++  L
Sbjct: 633 WCPYGLYEIALIYCNSCTKSARIIFALKLLRYL 665


>SB_30463| Best HMM Match : ZF-HD_dimer (HMM E-Value=5.4)
          Length = 276

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 248 CKLNIDPDYKNYRLLSQFQSPYTGRIYPRHIT 343
           CK  +DP+  +Y+LLS+   P  G   P H+T
Sbjct: 18  CKHAVDPEV-HYKLLSKNSIPEMGAHTPHHMT 48


>SB_12247| Best HMM Match : zf-C4_ClpX (HMM E-Value=1.8)
          Length = 213

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = +2

Query: 293 SQFQSPYTGRIYPRHITGLCKRKQMQVEQEITKAQDLAYMPYTYKHKIFLKDPKLF 460
           S + SPY G I P  +    KRK+  V+Q +       Y   T     +L D KL+
Sbjct: 16  SAYSSPYRGLISPTSLAASAKRKKAIVKQTLRGRLFTIYFHIT-DLPSYLDDYKLY 70


>SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2982

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = +2

Query: 293  SQFQSPYTGRIYPRHITGLCKRKQMQVEQEITKAQDLAYMPYTYKHKIFLKDPKLF 460
            S + SPY G I P  +    KRK+  V+Q +       Y   T     +L D KL+
Sbjct: 2777 SAYSSPYRGLISPTSLAASAKRKKAIVKQTLRGRLFTIYFHIT-DLPSYLDDYKLY 2831


>SB_36015| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 228

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 248 CKLNIDPDYKNYRLLSQFQSPYTGRIYPRHIT 343
           CK  +DP+  +Y+LLS+   P  G   P H+T
Sbjct: 18  CKHAVDPEV-HYKLLSKNSIPEMGAHTPHHMT 48


>SB_9425| Best HMM Match : F-box (HMM E-Value=1.1e-11)
          Length = 376

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 405 PICRTLTNIKYF*KIQNCLTLKT 473
           P C+ +TN   F   QNCL L+T
Sbjct: 150 PCCKNITNFTLFYVGQNCLRLRT 172


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,061,255
Number of Sequences: 59808
Number of extensions: 374962
Number of successful extensions: 781
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)