Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11i11f
         (548 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    27   0.095
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   1.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.0  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   2.7  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   4.7  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   6.2  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 27.5 bits (58), Expect = 0.095
 Identities = 28/126 (22%), Positives = 53/126 (42%)
 Frame = +2

Query: 59  IFLSINTYMKMALFKSFFARQMLSTHQAVLSTIRTQSTNLKPDPDAPVEMENPFKKELKQ 238
           +F++I  ++K    K+    +++      +  I  +   LK   D   EM    K +   
Sbjct: 339 MFINILKFLKQKYVKNSKLEKVIKHDILRMLIIDLRKKQLKSLEDWENEMNIITKGKPLI 398

Query: 239 CILCKLNIDPDYKNYRLLSQFQSPYTGRIYPRHITGLCKRKQMQVEQEITKAQDLAYMPY 418
            +   ++++   +N+  + ++  P  G I P      C+ K    + +   AQD    PY
Sbjct: 399 RVENIIDLEGAPQNFYYIEEYL-PGNGVIIPDDPPIGCECKTCNSKTKCCFAQDDGLCPY 457

Query: 419 TYKHKI 436
           T KHKI
Sbjct: 458 TLKHKI 463


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +1

Query: 7   RVMYPIFLFAINLF 48
           R+++P+F  AIN+F
Sbjct: 428 RIVFPLFFLAINVF 441


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 6/35 (17%)
 Frame = +1

Query: 112 CPANVKHSSGSTLHNQDTIHQ------PQTRPRCP 198
           CP   + +SGST    D +H+      PQ  P+CP
Sbjct: 536 CPHRRRANSGSTSSGDDELHRASLSKTPQP-PQCP 569


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 7/28 (25%), Positives = 13/28 (46%)
 Frame = -2

Query: 259 IKFTEYTLFQFFFEWIFHFNWGIWVWFE 176
           +K T   +  FF  W  ++   +W W +
Sbjct: 259 LKMTVIIIAVFFICWTPYYVMSLWYWID 286


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 317 GRIYPRHITGLCKRKQMQVEQEIT 388
           GR+   +I+ LCK   + V Q+++
Sbjct: 124 GRVRDHNISALCKELGISVVQKVS 147


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 122 MLSTHQAVLSTIRTQSTNLKPDPDAPVE 205
           M +T     STI+T    + PD  +P+E
Sbjct: 398 MATTSPQSQSTIQTLRPQVSPDRTSPME 425


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,346
Number of Sequences: 438
Number of extensions: 3729
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)