Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11i11f
(548 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g07210.1 68414.m00767 30S ribosomal protein S18 family contai... 36 0.013
At1g71790.1 68414.m08297 F-actin capping protein beta subunit fa... 30 1.2
At2g47210.1 68415.m05896 myb family transcription factor contain... 29 2.7
At1g52500.1 68414.m05926 formamidopyrimidine-DNA glycolase famil... 27 6.2
At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial a... 27 8.3
At5g20790.1 68418.m02470 expressed protein predicted protein, Ar... 27 8.3
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 27 8.3
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 27 8.3
At1g69310.2 68414.m07949 WRKY family transcription factor contai... 27 8.3
At1g69310.1 68414.m07948 WRKY family transcription factor contai... 27 8.3
At1g51940.1 68414.m05855 protein kinase family protein / peptido... 27 8.3
>At1g07210.1 68414.m00767 30S ribosomal protein S18 family contains
Pfam profile: PF01084 ribosomal protein S18; similar to
30S ribosomal protein S18 (SP:P80382) {Thermus
thermophilus}
Length = 261
Score = 36.3 bits (80), Expect = 0.013
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = +2
Query: 188 PDAPVEMENPFKKELKQCILCKLNI-DPDYKNYRLLSQFQSPYTGRIYPRHITGLCKRKQ 364
P +M+NP + K + + + + D++N R L+ F + G I R TG+ + Q
Sbjct: 148 PRMQKQMQNPRQNNSKSEVTTEEVLKNADFRNVRFLANFITE-AGIIIKRKQTGISAKAQ 206
Query: 365 MQVEQEITKAQDLAYMPYT 421
++ +EI A+ MP+T
Sbjct: 207 RKIAREIKTARAFGLMPFT 225
>At1g71790.1 68414.m08297 F-actin capping protein beta subunit
family protein contains Pfam profile: PF01115 F-actin
capping protein, beta subunit
Length = 256
Score = 29.9 bits (64), Expect = 1.2
Identities = 20/81 (24%), Positives = 36/81 (44%)
Frame = +2
Query: 89 MALFKSFFARQMLSTHQAVLSTIRTQSTNLKPDPDAPVEMENPFKKELKQCILCKLNIDP 268
+ L + +Q + A+LS I S++L D P+++ + K ILC+ N D
Sbjct: 5 LGLLRRMPPKQSETALSALLSLIPQHSSDLLSQVDLPLQVLRDIESG-KDFILCEYNRDA 63
Query: 269 DYKNYRLLSQFQSPYTGRIYP 331
D +++ P +YP
Sbjct: 64 DSYRSPWSNKYLPPLEDALYP 84
>At2g47210.1 68415.m05896 myb family transcription factor contains
Pfam profile: PF00249 myb DNA-binding domain
Length = 441
Score = 28.7 bits (61), Expect = 2.7
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Frame = +2
Query: 338 ITGLCKRKQMQV-EQEITKAQDLAY--MPYTYKHKIFLKDPKLFDPENPVRSHR 490
+T L +KQ+Q E E + ++ +Y MP T K ++F DP F E P++ +
Sbjct: 361 LTLLNLQKQLQYKESEGSSHREGSYAAMPDTPKDRVFAPDPFSFGAERPIKKEQ 414
>At1g52500.1 68414.m05926 formamidopyrimidine-DNA glycolase family
protein / mutM, putative (MMH-1) identical to mutM
homologue-2 [Arabidopsis thaliana] GP:3550983
PMID:9819050; contains Pfam profile PF01149:
Formamidopyrimidine-DNA glycosylase
Length = 274
Score = 27.5 bits (58), Expect = 6.2
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -2
Query: 232 QFFFEWIFHFNWG 194
+F EW+FHF WG
Sbjct: 235 EFPVEWLFHFRWG 247
>At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial
almost identical to Lon protease homolog 2
mitochondrial precursor SP:P93655, GI:1848290 from
[Arabidopsis thaliana]
Length = 940
Score = 27.1 bits (57), Expect = 8.3
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -1
Query: 452 LDLSKIFYVCKCTAYRLNPEPWLFPAPLASVFFYI 348
+DLSK+ +VC + P P L + S+ YI
Sbjct: 569 IDLSKVLFVCTANVIDMIPNPLLDRMEVISIAGYI 603
>At5g20790.1 68418.m02470 expressed protein predicted protein,
Arabidopsis thaliana
Length = 193
Score = 27.1 bits (57), Expect = 8.3
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 314 TGRIYPRHITGLCKRKQMQVEQEITKAQDL 403
+GR+ P+ ITG K +V++ +TK + L
Sbjct: 71 SGRLEPKSITGPVKETVARVKETVTKTEPL 100
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 27.1 bits (57), Expect = 8.3
Identities = 20/78 (25%), Positives = 30/78 (38%)
Frame = +2
Query: 68 SINTYMKMALFKSFFARQMLSTHQAVLSTIRTQSTNLKPDPDAPVEMENPFKKELKQCIL 247
S+ T K F + + H A+ + T D + ENP +K++ Q L
Sbjct: 213 SLYTACKSRGFVMISYYDIRAAHAAMRALQNTLLRKRTLDIHFSIPKENPSEKDMNQGTL 272
Query: 248 CKLNIDPDYKNYRLLSQF 301
N+D N LL F
Sbjct: 273 VIFNVDTTVSNDELLQLF 290
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 27.1 bits (57), Expect = 8.3
Identities = 20/78 (25%), Positives = 30/78 (38%)
Frame = +2
Query: 68 SINTYMKMALFKSFFARQMLSTHQAVLSTIRTQSTNLKPDPDAPVEMENPFKKELKQCIL 247
S+ T K F + + H A+ + T D + ENP +K++ Q L
Sbjct: 226 SLYTACKSRGFVMISYYDIRAAHAAMRALQNTLLRKRTLDIHFSIPKENPSEKDMNQGTL 285
Query: 248 CKLNIDPDYKNYRLLSQF 301
N+D N LL F
Sbjct: 286 VIFNVDTTVSNDELLQLF 303
>At1g69310.2 68414.m07949 WRKY family transcription factor contains
Pfam profile: PF03106 WRKY DNA -binding domain
Length = 287
Score = 27.1 bits (57), Expect = 8.3
Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Frame = +2
Query: 161 TQSTNLKPDPDAPVEMENPFKKELKQ---CILCKLNIDPDYKNYRLLSQFQSPYTGRIYP 331
T S P P+ PV+ + +K ++Q + K ++D YR Q +P
Sbjct: 107 TASAEKTPPPETPVKEKKKAQKRIRQPRFAFMTKSDVDNLEDGYRWRKYGQKAVKNSPFP 166
Query: 332 RHITGLCKRKQMQVEQEITKAQD 400
R C + V++ + ++ D
Sbjct: 167 RSYY-RCTNSRCTVKKRVERSSD 188
>At1g69310.1 68414.m07948 WRKY family transcription factor contains
Pfam profile: PF03106 WRKY DNA -binding domain
Length = 287
Score = 27.1 bits (57), Expect = 8.3
Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Frame = +2
Query: 161 TQSTNLKPDPDAPVEMENPFKKELKQ---CILCKLNIDPDYKNYRLLSQFQSPYTGRIYP 331
T S P P+ PV+ + +K ++Q + K ++D YR Q +P
Sbjct: 107 TASAEKTPPPETPVKEKKKAQKRIRQPRFAFMTKSDVDNLEDGYRWRKYGQKAVKNSPFP 166
Query: 332 RHITGLCKRKQMQVEQEITKAQD 400
R C + V++ + ++ D
Sbjct: 167 RSYY-RCTNSRCTVKKRVERSSD 188
>At1g51940.1 68414.m05855 protein kinase family protein /
peptidoglycan-binding LysM domain-containing protein
contains protein kinases ATP-binding region signature,
PROSITE:PS00107
Length = 651
Score = 27.1 bits (57), Expect = 8.3
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +2
Query: 209 ENPFKKELKQCILCKLNIDPDYKNYRLLSQFQSPYTGRIYP 331
+NP ++ L +L L PD N L +F P +YP
Sbjct: 551 KNPERRPLASIMLAVLKNSPDSMNMSSLKEFVDPNMMDLYP 591
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,918,968
Number of Sequences: 28952
Number of extensions: 254432
Number of successful extensions: 698
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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