Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11i10r
         (672 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100307-1|ABB88211.1|  317|Caenorhabditis elegans Hypothetical ...    29   2.3  
AL031627-21|CAA20970.1|  326|Caenorhabditis elegans Hypothetical...    28   6.9  
AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical...    27   9.2  

>AF100307-1|ABB88211.1|  317|Caenorhabditis elegans Hypothetical
           protein T12B5.6b protein.
          Length = 317

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 20/83 (24%), Positives = 41/83 (49%)
 Frame = +3

Query: 99  ANEFN*KKKNVSITNIILHXFTISCEYLIHRLTSRVSLFYSAVIWKLDKIRLQLVG*FNL 278
           A EF+   + V  TN I+H F   C Y I++L    +  ++A+  + D +R        +
Sbjct: 204 AEEFSINSRRVECTNAIVHFFHFKCFY-IYKLDEFSA--HTAIQIRDDLLRRSTFQSCTI 260

Query: 279 YYIKYTSVNDYEMTRLNRTQSTN 347
           Y++  + +N  E+ ++ ++   N
Sbjct: 261 YFVS-SKINPMEIAKVFKSDYGN 282


>AL031627-21|CAA20970.1|  326|Caenorhabditis elegans Hypothetical
           protein Y102A5C.33 protein.
          Length = 326

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +3

Query: 129 VSITNIILHXFTISCEYLIHRLTSRVSLFYSAVIWKLDKI 248
           +SIT++I   + I   YL   LT   +L+ S   WK  KI
Sbjct: 266 MSITDVITTPWLIQLSYLRCNLTELYTLYISFDFWKFLKI 305


>AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical
            protein Y26D4A.9 protein.
          Length = 1435

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -1

Query: 453  DDYYYDKY-HMLKTFKTLSCKISQLC*DYTVLMREDDLCFVSDLIESFRNRS 301
            +D   +KY +  K +    CK  +   DYT +   +D+  ++D+ E+FRN S
Sbjct: 879  EDISKEKYEYAQKVWNETKCKNLK---DYTEIYMINDVLLLADIFETFRNVS 927


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,140,066
Number of Sequences: 27780
Number of extensions: 202287
Number of successful extensions: 334
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)