Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11i08r
         (708 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q3AFJ6 Cluster: Methyl-accepting chemotaxis protein; n=...    33   6.9  
UniRef50_A3IT16 Cluster: Possible sodium dependent transporter; ...    33   6.9  
UniRef50_Q00TZ1 Cluster: Glucose-6-phosphate/phosphate and phosp...    33   6.9  
UniRef50_A6AFB0 Cluster: Putative membrane protein; n=1; Vibrio ...    33   9.1  

>UniRef50_Q3AFJ6 Cluster: Methyl-accepting chemotaxis protein; n=2;
           Carboxydothermus hydrogenoformans Z-2901|Rep:
           Methyl-accepting chemotaxis protein - Carboxydothermus
           hydrogenoformans (strain Z-2901 / DSM 6008)
          Length = 368

 Score = 33.1 bits (72), Expect = 6.9
 Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
 Frame = +2

Query: 284 YNTYYYYINLVLCTISLAFSLVFMIQVSNTVIIDM-NVYVLISL--YYFI*KYLHTRKKI 454
           YN ++Y++NLVL  IS    +VF I  SN + + +  + V  +L  YYFI  YL  +K+ 
Sbjct: 3   YNNWFYWLNLVLGGIS---GIVFGIIYSNFIFLLIGGILVFTNLWGYYFI--YLKEKKEF 57

Query: 455 A 457
           A
Sbjct: 58  A 58


>UniRef50_A3IT16 Cluster: Possible sodium dependent transporter;
           n=1; Cyanothece sp. CCY 0110|Rep: Possible sodium
           dependent transporter - Cyanothece sp. CCY 0110
          Length = 288

 Score = 33.1 bits (72), Expect = 6.9
 Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = +2

Query: 302 YINLVLCTISLAFSLVFMIQVSNTVIIDMNVYVLISLYYFI*KY-LHTRKKIAIS 463
           +I +VLC + +A S +F + + + + I +     + + YF+  + LH R  +AIS
Sbjct: 177 FIVMVLCILPVAVSFIFKMDILSVIAIVVTAIAALVIGYFLGGHNLHERSALAIS 231


>UniRef50_Q00TZ1 Cluster: Glucose-6-phosphate/phosphate and
           phosphoenolpyruvate/phosphate antiporter; n=2;
           Ostreococcus|Rep: Glucose-6-phosphate/phosphate and
           phosphoenolpyruvate/phosphate antiporter - Ostreococcus
           tauri
          Length = 355

 Score = 33.1 bits (72), Expect = 6.9
 Identities = 17/38 (44%), Positives = 23/38 (60%)
 Frame = +2

Query: 239 NLGVSILIPNAKFSIYNTYYYYINLVLCTISLAFSLVF 352
           ++GV  LI N KFS++N  YY+    L  I +  SLVF
Sbjct: 189 SVGVQYLIANRKFSLFNGMYYFSPATLVFI-MGLSLVF 225


>UniRef50_A6AFB0 Cluster: Putative membrane protein; n=1; Vibrio
           cholerae 623-39|Rep: Putative membrane protein - Vibrio
           cholerae 623-39
          Length = 380

 Score = 32.7 bits (71), Expect = 9.1
 Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
 Frame = +2

Query: 245 GVSILIPNAKFSIYNTYYYYINLVLCTISLAFSLVFMIQ--VSNTVIIDMNV--YVLISL 412
           G  I  P   F   + Y  +I L+LC  +   S  F+    V  ++ + M+   Y+++  
Sbjct: 162 GTIIFRPTGVFDEPSIYCGFIILLLCVYNYINSKDFLCDTIVGFSIFLTMSFAGYIMLFF 221

Query: 413 YYFI*KYLHTRKKIAIS*GMAVCITWVFIFTNKVI 517
           Y+FI KY    K   +   + +C T+ F  +N+ I
Sbjct: 222 YFFI-KYFKLNKWSFLLTIIMLCSTYTFFTSNEYI 255


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 625,136,918
Number of Sequences: 1657284
Number of extensions: 11726188
Number of successful extensions: 23849
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23837
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56611575523
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)